Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq119189 113 6e-23
seq63161 91.5 2e-16
>seq119189
Length=467
Score = 113 bits (124), Expect = 6e-23
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||||||||||||||||| ||||||||||| |||||| || |||| | |
Sbjct 72 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 131
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||| |||||| |||||| || ||||||||||||||| ||||
Sbjct 132 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 178
>seq63161
Length=6697
Score = 91.5 bits (100), Expect = 2e-16
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| ||||||| || |||||| | |||| |
Sbjct 165 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGGTCCTTAGAGAGAGTTGTCT 224
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| || ||| ||||| |||| | ||||||||||| |||| ||||
Sbjct 225 CGCACCCCTAGGTATTTTCTATCGACCCACCTGTGTCAGTTTTAGGTA 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693579353089
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |