Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq50007 170 5e-40 seq63972 158 3e-36 seq19264 116 9e-24 seq23268 96.9 9e-18 seq119189 84.2 6e-14 seq10754 75.2 3e-11 >seq50007 Length=6804 Score = 170 bits (188), Expect = 5e-40 Identities = 198/267 (74%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||||| || || ||||||||||| ||| |||||| ||| || ||| Sbjct 3637 GCATCTTCACAGCCATGTCTATTTCACTGAGCCTCTCTCCAAGACAGTGCCCAGATTGTT 3696 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| || |||| ||| ||||||||||||| ||||||||||||||||||||||| ||| Sbjct 3697 ACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACTATTA 3756 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||| || | ||||| || ||||||||| ||| | |||| | | || | ||| Sbjct 3757 TAATTATGGTCACCGTTCACTGGGGCTTCGGTCATCAACTTCCTTGTCATCAGGTCACCA 3816 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||| |||||| |||||||||||| || || | | ||| || ||| Sbjct 3817 ACTTTCTTGACCTTACGGCACTGGGCAGGCGTCAGCGCCCATGCATGGTCTTACGACTTT 3876 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAG 275 || ||| |||||||||| ||| ||| Sbjct 3877 GCGGAGACCTGTGTTTTTGGTAAGCAG 3903 >seq63972 Length=1708 Score = 158 bits (174), Expect = 3e-36 Identities = 210/289 (73%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTC-TCGGGTGGAGACAGCGCCGC 65 ||| | |||| |||||| || || ||||||| ||| | || |||||| ||| Sbjct 407 TACTCCGCATTTTCACACACATGTCTATTTCACCGAGCCCTCTCTCTAAGACAGTGCCCA 466 Query 66 CATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||||||||| ||||| | |||| |||||||| |||||||| |||||||||| |||| Sbjct 467 AATCGTTACGCCTTTCGTACGGGTCAGAACTTACTTGACAAGGA-TTTCGCTACCCTAGG 525 Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAG 181 |||||||| |||||||||||||| ||||||||||| || | ||| | | || Sbjct 526 ACCGTTATAATTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTCCCTTGTCATCAG 585 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 | ||| | || |||||||| ||| |||||||| ||| ||| |||| | ||| Sbjct 586 GTCACCGACTTCCTTGACCTTCCGACACTGGGCAGGCATCAACCCCCATACATGGTCTTA 645 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 || ||||| ||| ||||| |||| |||||| |||| ||||| || Sbjct 646 CGACTTTGCGGAGACCTGTGCTTTTGGTAAACAATCGCCAGGGCCTAGT 694 >seq19264 Length=16172 Score = 116 bits (128), Expect = 9e-24 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 382 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGAC 441 Query 128 CGTTATTGTTACGG 141 |||||| ||||||| Sbjct 442 CGTTATAGTTACGG 455 >seq23268 Length=4683 Score = 96.9 bits (106), Expect = 9e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| || |||||||| ||||||| ||||||||||||||||||||||||| Sbjct 4438 GAGACAGTGCCCAGATTGTTACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATT 4497 Query 113 TCGCTACCTTAGG 125 ||||||||||||| Sbjct 4498 TCGCTACCTTAGG 4510 >seq119189 Length=467 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 77 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 136 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 137 CCCTAGTATACTCTAC 152 >seq10754 Length=12094 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 90 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149 |||||||||||||||||||||||| || | |||| |||||||| |||| ||||||| Sbjct 5919 CGGAACTTACCCGACAAGGAATTTTGCCGCATTAGAACCGTTATAGTTATAATCGCCGTT 5978 Query 150 TACCGGGGCTT 160 | |||||||| Sbjct 5979 CATCGGGGCTT 5989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259261912256