Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq63972 228 2e-57
seq50007 215 1e-53
seq19264 143 6e-32
seq63161 120 6e-25
seq23268 118 2e-24
seq22339 93.3 9e-17
seq119189 82.4 2e-13
seq38886 78.8 2e-12
seq10754 75.2 2e-11
>seq63972
Length=1708
Score = 228 bits (252), Expect = 2e-57
Identities = 231/296 (78%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGT-TGAGACAGTGCCCA 59
||| | |||| ||||| || | ||||||||||| | | | | ||||||||||||
Sbjct 407 TACTCCGCATTTTCACACACATGTCTATTTCACCGAGCCCTCTCTCTAAGACAGTGCCCA 466
Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119
|||||||||||||||||| |||||| |||||||| |||||||| |||||||||| ||||
Sbjct 467 AATCGTTACGCCTTTCGTACGGGTCAGAACTTACTTGACAAGGA-TTTCGCTACCCTAGG 525
Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGC-TC-- 176
||||||||| |||||||||||||| || ||||||| ||| | ||| | | | ||
Sbjct 526 ACCGTTATAATTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTCCCTTGTCATCAG 585
Query 177 -TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235
| || || |||| ||||||| ||| |||||||| ||| | || |||||| |||||
Sbjct 586 GTCACCGACTTCCTTGACCTTCCGACACTGGGCAGGCATCAACCCCCATACATGGTCTTA 645
Query 236 CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291
|||||| || || ||||||| |||||||||||| |||| ||||||| || ||||
Sbjct 646 CGACTTTGCGGAGACCTGTGCTTTTGGTAAACAATCGCCAGGGCCTAGTCATTGCG 701
>seq50007
Length=6804
Score = 215 bits (238), Expect = 1e-53
Identities = 250/332 (75%), Gaps = 14/332 (4%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||| ||| || | |||||||||||| || |||
Sbjct 3637 GCATCTTCACAGCCATGTCTATTTCACTGAGCCTCTCTCCAAGACAGTGCCCAGATTGTT 3696
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 3697 ACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACTATTA 3756
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|| ||| || | ||||| |||||||||| || | |||| ||| || | ||| ||
Sbjct 3757 TAATTATGGTCACCGTTCACTGGGGCTTCGGTCATCAACTTC-CTTG-TC-ATCAGGTCA 3813
Query 187 C-------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239
| ||| ||||| | |||| |||||||||||||| || || ||| ||||| ||||
Sbjct 3814 CCAACTTTCTTGACCTTACGGCACTGGGCAGGCGTCAGCGCCCATGCATGGTCTTACGAC 3873
Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTG 296
|| || || ||||||||||||||||| ||| | | || |||| || |||| |||
Sbjct 3874 TTTGCGGAGACCTGTGTTTTTGGTAAGCAGCCACCTGAGCCTCATCATTGCGATCCCCTT 3933
Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTAC 328
| || | |||| |||||| || |||||||
Sbjct 3934 TGTGAG-GAAGCACTCCTTCTTCCGAAGTTAC 3964
>seq19264
Length=16172
Score = 143 bits (158), Expect = 6e-32
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 367 GAGACGGTGCCCAGGTCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATT 426
Query 107 TCGCTACCTTAGGACCGTTATAGTTACGG 135
|||||||||||||||||||||||||||||
Sbjct 427 TCGCTACCTTAGGACCGTTATAGTTACGG 455
>seq63161
Length=6697
Score = 120 bits (132), Expect = 6e-25
Identities = 129/169 (76%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| || || | |||| |||| || | | | || || ||| || || |||||| || |
Sbjct 44 CCTTGACTTTTCGGCACTAGGCAAGCATTAACCCCCATCCATGGTGTTACGACTTTGCGG 103
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG---CGGCCTGTCATAGA 303
| ||||||||||||||||||||| ||| ||||||| || ||| | ||| | ||
Sbjct 104 AGACCTGTGTTTTTGGTAAACAGCCGCCCGGGCCTAGTCACTGCAACCCCCTTTGTGAG- 162
Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
|||||||||||||||| ||||||||||| ||||||| ||| ||||||
Sbjct 163 GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGGTCCTTA 211
>seq23268
Length=4683
Score = 118 bits (130), Expect = 2e-24
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4438 GAGACAGTGCCCAGATTGTTACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATT 4497
Query 107 TCGCTACCTTAGG 119
|||||||||||||
Sbjct 4498 TCGCTACCTTAGG 4510
>seq22339
Length=13160
Score = 93.3 bits (102), Expect = 9e-17
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||| ||||| ||||| |||||||| || ||| || ||||| |||||| ||||
Sbjct 11890 CCTTGACCTTCTAGCACTGGGCATGCGTCAGCCCCCATATATGGTCTTACGACTTTGCAG 11949
Query 247 AAACCT---GTGTTTTTGGTAAACAGTCGC 273
| |||| |||||||||||||| ||||||
Sbjct 11950 ATACCTCATGTGTTTTTGGTAAATAGTCGC 11979
>seq119189
Length=467
Score = 82.4 bits (90), Expect = 2e-13
Identities = 93/125 (74%), Gaps = 10/125 (8%)
Strand=Plus/Plus
Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGA 303
||||||||||| |||||||||||| ||| | | ||| || | | | |||
Sbjct 5 CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGA 64
Query 304 CAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359
||| ||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 65 TAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGG 124
Query 360 TTCTC 364
|||||
Sbjct 125 TTCTC 129
>seq38886
Length=9769
Score = 78.8 bits (86), Expect = 2e-12
Identities = 71/88 (81%), Gaps = 5/88 (6%)
Strand=Plus/Minus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||| |||| |||||||||||||| || |||||| ||||| |||||| ||||
Sbjct 7910 CCTTGACCTTCGGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTCCGACTTTGCAG 7851
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCT 274
| || ||| |||||| |||||| ||
Sbjct 7850 AGAC--GTGATTTTGG---ACAGTCTCT 7828
>seq10754
Length=12094
Score = 75.2 bits (82), Expect = 2e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 84 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143
|||||||||||||||||||||||| || | |||| ||||||||||||| |||||||
Sbjct 5919 CGGAACTTACCCGACAAGGAATTTTGCCGCATTAGAACCGTTATAGTTATAATCGCCGTT 5978
Query 144 TACTGGGGCTT 154
| |||||||
Sbjct 5979 CATCGGGGCTT 5989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1061103946368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |