Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq63972 228 2e-57 seq50007 215 1e-53 seq19264 143 6e-32 seq63161 120 6e-25 seq23268 118 2e-24 seq22339 93.3 9e-17 seq119189 82.4 2e-13 seq38886 78.8 2e-12 seq10754 75.2 2e-11 >seq63972 Length=1708 Score = 228 bits (252), Expect = 2e-57 Identities = 231/296 (78%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGT-TGAGACAGTGCCCA 59 ||| | |||| ||||| || | ||||||||||| | | | | |||||||||||| Sbjct 407 TACTCCGCATTTTCACACACATGTCTATTTCACCGAGCCCTCTCTCTAAGACAGTGCCCA 466 Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 |||||||||||||||||| |||||| |||||||| |||||||| |||||||||| |||| Sbjct 467 AATCGTTACGCCTTTCGTACGGGTCAGAACTTACTTGACAAGGA-TTTCGCTACCCTAGG 525 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGC-TC-- 176 ||||||||| |||||||||||||| || ||||||| ||| | ||| | | | || Sbjct 526 ACCGTTATAATTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTCCCTTGTCATCAG 585 Query 177 -TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG 235 | || || |||| ||||||| ||| |||||||| ||| | || |||||| ||||| Sbjct 586 GTCACCGACTTCCTTGACCTTCCGACACTGGGCAGGCATCAACCCCCATACATGGTCTTA 645 Query 236 CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291 |||||| || || ||||||| |||||||||||| |||| ||||||| || |||| Sbjct 646 CGACTTTGCGGAGACCTGTGCTTTTGGTAAACAATCGCCAGGGCCTAGTCATTGCG 701 >seq50007 Length=6804 Score = 215 bits (238), Expect = 1e-53 Identities = 250/332 (75%), Gaps = 14/332 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||| ||| || | |||||||||||| || ||| Sbjct 3637 GCATCTTCACAGCCATGTCTATTTCACTGAGCCTCTCTCCAAGACAGTGCCCAGATTGTT 3696 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||| Sbjct 3697 ACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACTATTA 3756 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 || ||| || | ||||| |||||||||| || | |||| ||| || | ||| || Sbjct 3757 TAATTATGGTCACCGTTCACTGGGGCTTCGGTCATCAACTTC-CTTG-TC-ATCAGGTCA 3813 Query 187 C-------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 | ||| ||||| | |||| |||||||||||||| || || ||| ||||| |||| Sbjct 3814 CCAACTTTCTTGACCTTACGGCACTGGGCAGGCGTCAGCGCCCATGCATGGTCTTACGAC 3873 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTG 296 || || || ||||||||||||||||| ||| | | || |||| || |||| ||| Sbjct 3874 TTTGCGGAGACCTGTGTTTTTGGTAAGCAGCCACCTGAGCCTCATCATTGCGATCCCCTT 3933 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTAC 328 | || | |||| |||||| || ||||||| Sbjct 3934 TGTGAG-GAAGCACTCCTTCTTCCGAAGTTAC 3964 >seq19264 Length=16172 Score = 143 bits (158), Expect = 6e-32 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 367 GAGACGGTGCCCAGGTCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATT 426 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGG 135 ||||||||||||||||||||||||||||| Sbjct 427 TCGCTACCTTAGGACCGTTATAGTTACGG 455 >seq63161 Length=6697 Score = 120 bits (132), Expect = 6e-25 Identities = 129/169 (76%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| || || | |||| |||| || | | | || || ||| || || |||||| || | Sbjct 44 CCTTGACTTTTCGGCACTAGGCAAGCATTAACCCCCATCCATGGTGTTACGACTTTGCGG 103 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG---CGGCCTGTCATAGA 303 | ||||||||||||||||||||| ||| ||||||| || ||| | ||| | || Sbjct 104 AGACCTGTGTTTTTGGTAAACAGCCGCCCGGGCCTAGTCACTGCAACCCCCTTTGTGAG- 162 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| ||||||| ||| |||||| Sbjct 163 GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGGTCCTTA 211 >seq23268 Length=4683 Score = 118 bits (130), Expect = 2e-24 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4438 GAGACAGTGCCCAGATTGTTACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATT 4497 Query 107 TCGCTACCTTAGG 119 ||||||||||||| Sbjct 4498 TCGCTACCTTAGG 4510 >seq22339 Length=13160 Score = 93.3 bits (102), Expect = 9e-17 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||| ||||| ||||| |||||||| || ||| || ||||| |||||| |||| Sbjct 11890 CCTTGACCTTCTAGCACTGGGCATGCGTCAGCCCCCATATATGGTCTTACGACTTTGCAG 11949 Query 247 AAACCT---GTGTTTTTGGTAAACAGTCGC 273 | |||| |||||||||||||| |||||| Sbjct 11950 ATACCTCATGTGTTTTTGGTAAATAGTCGC 11979 >seq119189 Length=467 Score = 82.4 bits (90), Expect = 2e-13 Identities = 93/125 (74%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGA 303 ||||||||||| |||||||||||| ||| | | ||| || | | | ||| Sbjct 5 CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGA 64 Query 304 CAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 ||| ||||||||||||| |||||||||||||||||||||||||||||| || | Sbjct 65 TAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGG 124 Query 360 TTCTC 364 ||||| Sbjct 125 TTCTC 129 >seq38886 Length=9769 Score = 78.8 bits (86), Expect = 2e-12 Identities = 71/88 (81%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||| |||| |||||||||||||| || |||||| ||||| |||||| |||| Sbjct 7910 CCTTGACCTTCGGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTCCGACTTTGCAG 7851 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCT 274 | || ||| |||||| |||||| || Sbjct 7850 AGAC--GTGATTTTGG---ACAGTCTCT 7828 >seq10754 Length=12094 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143 |||||||||||||||||||||||| || | |||| ||||||||||||| ||||||| Sbjct 5919 CGGAACTTACCCGACAAGGAATTTTGCCGCATTAGAACCGTTATAGTTATAATCGCCGTT 5978 Query 144 TACTGGGGCTT 154 | ||||||| Sbjct 5979 CATCGGGGCTT 5989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061103946368