Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq79408 185 3e-44 seq111294 152 2e-34 seq43084 143 8e-32 seq6995 143 8e-32 seq80174 122 3e-25 seq21396 111 5e-22 seq55810 109 2e-21 seq27166 109 2e-21 seq25900 107 6e-21 seq104230 96.9 1e-17 seq37837 89.7 2e-15 seq86735 78.8 3e-12 seq21474 78.8 3e-12 seq112795 77.0 1e-11 >seq79408 Length=2054 Score = 185 bits (204), Expect = 3e-44 Identities = 170/210 (81%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 46 CAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGAC 105 |||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||| Sbjct 1769 CAAGGGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGAC 1828 Query 106 ATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATG 165 || || || ||||| |||| | ||| | || |||||| | | ||||||| || Sbjct 1829 ATGCTGCGAATCCTCTTGAGAGAAAGGGGTGCC-TTCGGGAATGCG-GACACAGGTGGTG 1886 Query 166 CATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACC 225 ||||| ||||||||||||||| ||| || |||| |||||||||||||||||||||||| | Sbjct 1887 CATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTAGGTTAAGTCCCGCAACGAGCGCAA-C 1945 Query 226 CTTAAGCTTAGTTGCCATCATT-AAGTTGG 254 || | |||||||||||| || || |||| Sbjct 1946 CTCGTGTTTAGTTGCCATCGTTGAATTTGG 1975 >seq111294 Length=624 Score = 152 bits (168), Expect = 2e-34 Identities = 131/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||||||||||| || ||| || ||||||||||||||||||||| Sbjct 488 ACAGGTGGTGCATGGCTGTCGTCAGCTCATGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 429 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||||| |||||| | |||||||||||| || | || | || | | ||||||||| Sbjct 428 GAGCGAAACCCTCGTGTTTAGTTGCCATCGTTGAATTTGAAACCTTGAACAGACTGCCGG 369 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATG 317 ||| || | |||||||||| || |||||||| |||||||| Sbjct 368 TGATAAGCTGGAGGAAGGTAAAGATGACGTCAAGTCATCATG 327 >seq43084 Length=7265 Score = 143 bits (158), Expect = 8e-32 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||||||||||| || ||| || ||||||||||||||||||||| Sbjct 3876 ACAGGTGGTGCATGGTTGTCGTCAGCTTTTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 3935 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||||||| | |||||||||||| || | || || || || | |||| |||| Sbjct 3936 GAGCGCAACCCTCGTGTTTAGTTGCCATCGTTGAATTTGGAACCCTGAACAGACTCCCGG 3995 Query 276 TGACAAACCGGAGGAAG 292 ||| || |||||||||| Sbjct 3996 TGATAAGCCGGAGGAAG 4012 >seq6995 Length=4023 Score = 143 bits (158), Expect = 8e-32 Identities = 199/278 (72%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||| | |||||||||||| | |||||| |||||||||||||||| Sbjct 286 CGCAAGAATGAAACTCGAGGGAATTGACGGGAGCTTACACAAGTGGTGGAGCATGTGGTT 227 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| |||| | |||||||| ||||| |||||||| || ||| | ||| || | Sbjct 226 TAATTCGATGCAAAGTGAAGAACCCTACCAGGGCTTGACATGCTGTGAATCATCTTGAAA 167 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 ||||| | || || | | ||| ||| ||| ||||||||| | | |||| ||| Sbjct 166 GAGAGGGGTGCCTTT--GTGAACACGAACACAAGTGGTGCATGGTTACCATAAGCTAGTG 109 Query 187 TCGTGA------GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 || | | | |||||||||||||| | |||| || || | | |||||||| Sbjct 108 CTGTAAGGTATTGGTATTGGGTTAAGTCCCATGAGGAGCACATCCTTCATATTTAGTTGC 49 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGA 278 |||||| | || | || || | ||||| |||||| Sbjct 48 TATCATTGAATTTAGAACCCTGAAAAGACTGTCGGTGA 11 >seq80174 Length=4885 Score = 122 bits (134), Expect = 3e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 4328 GCAAGATCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTT 4387 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||| ||| ||| | |||||||||| |||| ||| Sbjct 4388 AATTCGATACAATGCGCAAAACCTTACCAGCCCTTGCCAT 4427 >seq21396 Length=851 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 |||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 851 CAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGATGTTGGGTTAAGTCCCGCAACG 792 Query 217 AGCGCAACCCT 227 ||||||||||| Sbjct 791 AGCGCAACCCT 781 >seq55810 Length=13036 Score = 109 bits (120), Expect = 2e-21 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19 ACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCA 78 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 3810 ACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCA 3751 Query 79 ACGCGAAGAA 88 | ||||| || Sbjct 3750 AAGCGAAAAA 3741 >seq27166 Length=1892 Score = 109 bits (120), Expect = 2e-21 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 35 GGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC 94 |||| || ||||| || |||||||||||||||||||||| |||| ||||||||||||| Sbjct 981 GGGGGCCTACACAACCGATGGAGCATGTGGTTTAATTCGATGCAAATCGAAGAACCTTAC 1040 Query 95 CAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGT 154 | |||||||| | || ||||| || | ||||| | ||||| ||| ||| | Sbjct 1041 TAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGT-GCCTTC-GGGAACACGGA 1098 Query 155 GACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 ||||||| ||||||| | || |||||||||| Sbjct 1099 CACAGGTGGTGCATGGCTATCATCAGCTCGTG 1130 >seq25900 Length=11112 Score = 107 bits (118), Expect = 6e-21 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223 ||||||| |||| ||||||| || | | || ||||||||||||||| ||||||||||||| Sbjct 7072 TGCATGGCTGTCATCAGCTCATGCCATAAGGTGTTGGGTTAAGTCCGGCAACGAGCGCAA 7013 Query 224 CCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAAC 283 |||| | ||||||||||||||| | || || || | |||||||||||| || | Sbjct 7012 CCCTCGTGTTTAGTTGCCATCATTGAATTTGGAACCTTGTACAGACTGCCGGTGATAAGC 6953 Query 284 CG 285 || Sbjct 6952 CG 6951 >seq104230 Length=4632 Score = 96.9 bits (106), Expect = 1e-17 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||| | || |||||||||||||||||| || Sbjct 265 TACGTTCGCAAGAATGAAACTCAAAGGAATTGATGAGGCCCCGCACAAGCGGTGGAGAAT 206 Query 61 GTGGTTTAA------TTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGA 114 | | || ||||| |||| | |||||||||||||| |||||||| | || Sbjct 205 GAAACTCAAAGGTTCTTCGATGCAAAGTGAAGAACCTTACCAGGGCTTGACATGACCCGA 146 Query 115 CCCCTCTAGAGATAGAGG 132 ||||| || | ||||| Sbjct 145 ATCCTCTTGAAAGAGAGG 128 >seq37837 Length=7422 Score = 89.7 bits (98), Expect = 2e-15 Identities = 138/193 (72%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 35 GGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC 94 |||| || || ||||||||| |||||||| |||||| ||| |||||| | |||||||| Sbjct 3262 GGGGCCCAGCTCAAGCGGTGAAGCATGTGCTTTAATACGATACAACGCTTAAAACCTTAC 3203 Query 95 CAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGT 154 || |||||||| ||| | | | | || ||| | | | | || Sbjct 3202 CAGCCCTTGACATA---TGAACAA-CAAAACCTACC--TTTAACGT--GATGTACTTTCA 3151 Query 155 GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA 214 ||||||| ||||||| ||||||||||| |||||||||||||| ||| ||||| || Sbjct 3150 TACAGGTGTTGCATGGCAGTCGTCAGCTCATGTCGTGAGATGTTTGGTCAAGTCATTTAA 3091 Query 215 CGAGCGCAACCCT 227 |||||| |||||| Sbjct 3090 CGAGCGAAACCCT 3078 >seq86735 Length=21049 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 |||| || ||||||||||||||||||||||| | | || |||||||||||||| |||||| Sbjct 8503 ACAGATGGTGCATGGTTGTCGTCAGCTCGTGCCATAAGGTGTTGGGTTAAGTCTCGCAAC 8562 Query 216 G 216 | Sbjct 8563 G 8563 >seq21474 Length=7405 Score = 78.8 bits (86), Expect = 3e-12 Identities = 122/173 (71%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389 ||||| ||| ||||||||| ||| | ||||| ||| | | | | ||| |||| Sbjct 681 TGGGCCACAAACGTGCTACTATGTCAATTACAATGGGAAACAAGTTTGTAAGGCGAAGCG 740 Query 390 AATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGG 449 |||| | || ||| |||| || ||| ||| ||| ||||| | | || ||| ||| Sbjct 741 AATCTGAAAAGATTGC-CTCAATTTGGAGTGTTCTCTACAACTTGGGAACATAAAGTTGG 799 Query 450 AATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||||||| |||| ||||||||||| || ||||||| || | || |||| Sbjct 800 AATCGCTAGCAATCACGGATCAGCATGCCACAGTGAATATGTACACGGGCCCT 852 >seq112795 Length=3079 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 ||||| ||||| ||| || |||| || ||| |||||||| ||||| ||||| |||| Sbjct 1052 ACTGCTGGTGATGAACTAGATGAAGATGAGGATGACGTCAAGTCATCTTGCCCTTTATAC 1111 Query 328 TTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCG 379 ||||| ||||| ||||||||||| | |||||||| | || ||||| Sbjct 1112 CCTGGGCGACACATGTGCTACAATGACCTGGACAAAGGGTCGTGATCCCGCG 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502165225280