Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq81760 228 1e-57 seq66561 134 2e-29 seq107562 109 9e-22 seq96172 107 3e-21 seq104006 89.7 8e-16 >seq81760 Length=5622 Score = 228 bits (252), Expect = 1e-57 Identities = 190/230 (83%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 |||||||||||||||||||||| ||||||||| |||||||||||||||||| | | || Sbjct 3206 TGCGGCCCAGAACATCTAAGGGAATCACAGACATGTTATTGCCTCAAACTTACGCAGCCT 3265 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC-AACCATAG-TCGATGGGGCTATTTA 148 ||| ||||||||||||||||| || | || ||| || ||| |||| ||| Sbjct 3266 AAAAGGTCGTAGTCCCTCTAAGAAGCTGGCTGCAGAAGGATACCTCCATGTAGCTAGTTA 3325 Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 ||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 3326 GCAGGCTACGGTCTCGTTCGTTAATGGAATTAACCAGACAAATCGCTCCACCAACTAAGA 3385 Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||| |||||||||| |||||||| | ||| |||||| Sbjct 3386 ACAATCATGCACCACCATCCATAGAATCTAGAAAGAGATCTCAGTCTGTC 3435 >seq66561 Length=1373 Score = 134 bits (148), Expect = 2e-29 Identities = 92/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CCATCAGTATAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 124 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 ||||||||||| | || ||| | ||||||||||||||||| Sbjct 123 CTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGC 80 >seq107562 Length=8737 Score = 109 bits (120), Expect = 9e-22 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| Sbjct 3216 CAGTGTAGCGCGCGTGCGGCCCTAAACATCTAAGGGCATCAAAGACCTATTATTGCCTCA 3275 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 | ||||| | || ||| || ||||||||||| Sbjct 3276 ATCTTCCGCGGCCTAAAAGACAGAAGTCCCTCTAA 3310 >seq96172 Length=2600 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||||| || | ||||||| ||||||||| |||||| ||||| || || | Sbjct 554 CTAGTTAGCTGGCTGAGGTCTCACTCGTTATCGCAATTAAGCAGACGTTTCGGAATACGA 613 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 614 ATCAAGAACGGCCATGCACCACCATCCTCTGAATCAAGAAAGAGCTATCAATCTGTC 670 Score = 86.0 bits (94), Expect = 1e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || || |||||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 330 CGCCATTGTAGCACGCGTGCGGCCTAGAGTATCTAAGGGCATCACAGACCTGTTATTGCC 389 Query 74 TC 75 || Sbjct 390 TC 391 >seq104006 Length=4004 Score = 89.7 bits (98), Expect = 8e-16 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 || ||||||| ||||| || || ||||||| ||||||||||||| |||| || |||||| Sbjct 937 TCTTTCGTTAATGGAATCAATCAAACAAATCCCTCCACCAACTAATAACGACCGTGCACC 996 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||| |||| |||||| | | ||| |||| Sbjct 997 ACCACCAATATAATCTTGAAAGATGTCTAAATTTGTC 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795858336033