Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq81760 228 1e-57
seq66561 134 2e-29
seq107562 109 9e-22
seq96172 107 3e-21
seq104006 89.7 8e-16
>seq81760
Length=5622
Score = 228 bits (252), Expect = 1e-57
Identities = 190/230 (83%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90
|||||||||||||||||||||| ||||||||| |||||||||||||||||| | | ||
Sbjct 3206 TGCGGCCCAGAACATCTAAGGGAATCACAGACATGTTATTGCCTCAAACTTACGCAGCCT 3265
Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC-AACCATAG-TCGATGGGGCTATTTA 148
||| ||||||||||||||||| || | || ||| || ||| |||| |||
Sbjct 3266 AAAAGGTCGTAGTCCCTCTAAGAAGCTGGCTGCAGAAGGATACCTCCATGTAGCTAGTTA 3325
Query 149 GCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208
||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 3326 GCAGGCTACGGTCTCGTTCGTTAATGGAATTAACCAGACAAATCGCTCCACCAACTAAGA 3385
Query 209 ACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||||| |||||||||| |||||||| | ||| ||||||
Sbjct 3386 ACAATCATGCACCACCATCCATAGAATCTAGAAAGAGATCTCAGTCTGTC 3435
>seq66561
Length=1373
Score = 134 bits (148), Expect = 2e-29
Identities = 92/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCATCAGTATAGCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 124
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116
||||||||||| | || ||| | |||||||||||||||||
Sbjct 123 CTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGC 80
>seq107562
Length=8737
Score = 109 bits (120), Expect = 9e-22
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 3216 CAGTGTAGCGCGCGTGCGGCCCTAAACATCTAAGGGCATCAAAGACCTATTATTGCCTCA 3275
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111
| ||||| | || ||| || |||||||||||
Sbjct 3276 ATCTTCCGCGGCCTAAAAGACAGAAGTCCCTCTAA 3310
>seq96172
Length=2600
Score = 107 bits (118), Expect = 3e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| ||||| || | ||||||| ||||||||| |||||| ||||| || || |
Sbjct 554 CTAGTTAGCTGGCTGAGGTCTCACTCGTTATCGCAATTAAGCAGACGTTTCGGAATACGA 613
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 614 ATCAAGAACGGCCATGCACCACCATCCTCTGAATCAAGAAAGAGCTATCAATCTGTC 670
Score = 86.0 bits (94), Expect = 1e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73
|| || |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 330 CGCCATTGTAGCACGCGTGCGGCCTAGAGTATCTAAGGGCATCACAGACCTGTTATTGCC 389
Query 74 TC 75
||
Sbjct 390 TC 391
>seq104006
Length=4004
Score = 89.7 bits (98), Expect = 8e-16
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221
|| ||||||| ||||| || || ||||||| ||||||||||||| |||| || ||||||
Sbjct 937 TCTTTCGTTAATGGAATCAATCAAACAAATCCCTCCACCAACTAATAACGACCGTGCACC 996
Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| ||| |||| |||||| | | ||| ||||
Sbjct 997 ACCACCAATATAATCTTGAAAGATGTCTAAATTTGTC 1033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795858336033
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |