Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq65542 161 2e-37 seq63160 113 9e-23 seq50007 91.5 3e-16 seq69597 87.8 4e-15 >seq65542 Length=1476 Score = 161 bits (178), Expect = 2e-37 Identities = 159/203 (78%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| |||||| ||| ||||||||||| ||||| | |||| | ||| || Sbjct 295 TGGGGCGTAGGCCTCCTAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCGGACGG 236 Query 198 AAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256 | | || | | |||||||||||| ||||| | |||||||| | |||| | ||| || Sbjct 235 AGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAG 177 Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGAC 316 |||||||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| || Sbjct 176 CAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAAC 117 Query 317 GGATAAAAGCTACCCTGGGGATA 339 ||||||||| ||| || |||||| Sbjct 116 GGATAAAAGTTACTCTAGGGATA 94 >seq63160 Length=1392 Score = 113 bits (124), Expect = 9e-23 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | ||||| |||||| |||||| ||| |||||||||| Sbjct 1372 GGGACAGTCTCAGGTAGATAGTTTCTATGGGGCATAGGCCTCCTAAAAGGTAACGGAGGT 1313 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAAC---CATGCGCACAGTGCAAAGGCAAAAGG 227 | ||||| | |||| | |||| ||| | | | || |||||||||||| |||| Sbjct 1312 GTGCAAAGGTTTCCTCGGGCTGGACGGAGATTGGCCTTCG---AGTGCAAAGGCAGAAGG 1256 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | |||| | || |||||||||||||||||| |||| | ||| | Sbjct 1255 GAGCTTGACTGCAAGACCCACCCATCGAGCAGGGACGAAAGTCGGCCTTAGTTATCTGAT 1196 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || || ||||| |||| | ||| | ||||||| | || || |||||| Sbjct 1195 AGCGCCGACTGGAAGGGCCAACACTCAATGGATAAAGGTTAATCTAGGGATA 1144 >seq50007 Length=6804 Score = 91.5 bits (100), Expect = 3e-16 Identities = 119/161 (74%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||| |||| ||||| |||||| ||||| | |||| | ||||| | | || Sbjct 3413 GCCTCCAAAAG-GTAACAGAGGCGTGCAAAGGTTTCCTCGGGCCGGATGAAGATTG-GCC 3356 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||||||| | ||| | |||||||| | ||| | || |||| |||| || Sbjct 3355 CTCGAGTGCAAAGGCAGATGGGAGCTTGACTGCAAGACCTACCCATCGAGCAAGGACAAA 3296 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 |||||| |||| ||||||| |||||| | ||||| ||||| Sbjct 3295 AGTCGGCCTTAGTGATCCGACGGTGCCAAGTGGAATGGCCG 3255 >seq69597 Length=2158 Score = 87.8 bits (96), Expect = 4e-15 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 243 ACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAAC 302 |||| | ||| |||||||||||||||||| |||| ||||||| ||||| || ||||| Sbjct 1572 ACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGATGGTGCCGAGTGGAAG 1631 Query 303 GGCCGTCGCTCGACGGATAAAAGCTA 328 || |||||||| | ||||||||| || Sbjct 1632 GGTCGTCGCTCAAAGGATAAAAGTTA 1657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981201540768