Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq65542 161 2e-37
seq63160 113 9e-23
seq50007 91.5 3e-16
seq69597 87.8 4e-15
>seq65542
Length=1476
Score = 161 bits (178), Expect = 2e-37
Identities = 159/203 (78%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197
||||||| |||||| ||| ||||||||||| ||||| | |||| | ||| ||
Sbjct 295 TGGGGCGTAGGCCTCCTAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCCGGACGG 236
Query 198 AAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256
| | || | | |||||||||||| ||||| | |||||||| | |||| | ||| ||
Sbjct 235 AGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAG 177
Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGAC 316
|||||||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| ||
Sbjct 176 CAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAAC 117
Query 317 GGATAAAAGCTACCCTGGGGATA 339
||||||||| ||| || ||||||
Sbjct 116 GGATAAAAGTTACTCTAGGGATA 94
>seq63160
Length=1392
Score = 113 bits (124), Expect = 9e-23
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | ||||| |||||| |||||| ||| ||||||||||
Sbjct 1372 GGGACAGTCTCAGGTAGATAGTTTCTATGGGGCATAGGCCTCCTAAAAGGTAACGGAGGT 1313
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAAC---CATGCGCACAGTGCAAAGGCAAAAGG 227
| ||||| | |||| | |||| ||| | | | || |||||||||||| ||||
Sbjct 1312 GTGCAAAGGTTTCCTCGGGCTGGACGGAGATTGGCCTTCG---AGTGCAAAGGCAGAAGG 1256
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | |||| | || |||||||||||||||||| |||| | ||| |
Sbjct 1255 GAGCTTGACTGCAAGACCCACCCATCGAGCAGGGACGAAAGTCGGCCTTAGTTATCTGAT 1196
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| || || ||||| |||| | ||| | ||||||| | || || ||||||
Sbjct 1195 AGCGCCGACTGGAAGGGCCAACACTCAATGGATAAAGGTTAATCTAGGGATA 1144
>seq50007
Length=6804
Score = 91.5 bits (100), Expect = 3e-16
Identities = 119/161 (74%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207
|||||| |||| ||||| |||||| ||||| | |||| | ||||| | | ||
Sbjct 3413 GCCTCCAAAAG-GTAACAGAGGCGTGCAAAGGTTTCCTCGGGCCGGATGAAGATTG-GCC 3356
Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266
| | |||||||||||| | ||| | |||||||| | ||| | || |||| |||| ||
Sbjct 3355 CTCGAGTGCAAAGGCAGATGGGAGCTTGACTGCAAGACCTACCCATCGAGCAAGGACAAA 3296
Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307
|||||| |||| ||||||| |||||| | ||||| |||||
Sbjct 3295 AGTCGGCCTTAGTGATCCGACGGTGCCAAGTGGAATGGCCG 3255
>seq69597
Length=2158
Score = 87.8 bits (96), Expect = 4e-15
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 243 ACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAAC 302
|||| | ||| |||||||||||||||||| |||| ||||||| ||||| || |||||
Sbjct 1572 ACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGATGGTGCCGAGTGGAAG 1631
Query 303 GGCCGTCGCTCGACGGATAAAAGCTA 328
|| |||||||| | ||||||||| ||
Sbjct 1632 GGTCGTCGCTCAAAGGATAAAAGTTA 1657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981201540768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |