Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq19264 93.3 5e-17
seq23268 80.6 3e-13
seq50007 75.2 1e-11
seq63972 73.4 4e-11
>seq19264
Length=16172
Score = 93.3 bits (102), Expect = 5e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 386 TACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCGTT 445
Query 173 A 173
|
Sbjct 446 A 446
>seq23268
Length=4683
Score = 80.6 bits (88), Expect = 3e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166
||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4457 TACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 4510
>seq50007
Length=6804
Score = 75.2 bits (82), Expect = 1e-11
Identities = 92/127 (72%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGA-GACAGN 101
|| |||| || |||||||||| | | | |||||||||||| | | | | |||||
Sbjct 3626 GCAGGTAGTCCGCATCTTCACAGCCATGTCTATTTCACTGAGC-CTCTCTCCAAGACAGT 3684
Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161
||| || || |||| ||| ||||||||||||| ||||||||||||||||
Sbjct 3685 GCCCAGATTGTTACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACC 3744
Query 162 TTAGGAC 168
|||||||
Sbjct 3745 TTAGGAC 3751
>seq63972
Length=1708
Score = 73.4 bits (80), Expect = 4e-11
Identities = 106/150 (71%), Gaps = 3/150 (2%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| | || |||| || |||| ||||| | | | ||||||| |||
Sbjct 385 GGGTCTTTCTGTCCAGT-GCAGGTACTCCGCATTTTCACACACATGTCTATTTCACCGAG 443
Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | | |||||| ||| || ||||| | |||| |||||||| |
Sbjct 444 CCCTCTCTCTAAGACAGTGCCCAAATCGTTACGCCTTTCGTACGGGTCAGAACTTACTTG 503
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||| |||||||||| |||||||||||
Sbjct 504 ACAAGGA-TTTCGCTACCCTAGGACCGTTA 532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546553315107
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |