Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq19264 93.3 5e-17 seq23268 80.6 3e-13 seq50007 75.2 1e-11 seq63972 73.4 4e-11 >seq19264 Length=16172 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 386 TACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCGTT 445 Query 173 A 173 | Sbjct 446 A 446 >seq23268 Length=4683 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 ||| || ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4457 TACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 4510 >seq50007 Length=6804 Score = 75.2 bits (82), Expect = 1e-11 Identities = 92/127 (72%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGA-GACAGN 101 || |||| || |||||||||| | | | |||||||||||| | | | | ||||| Sbjct 3626 GCAGGTAGTCCGCATCTTCACAGCCATGTCTATTTCACTGAGC-CTCTCTCCAAGACAGT 3684 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || || |||| ||| ||||||||||||| |||||||||||||||| Sbjct 3685 GCCCAGATTGTTACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACC 3744 Query 162 TTAGGAC 168 ||||||| Sbjct 3745 TTAGGAC 3751 >seq63972 Length=1708 Score = 73.4 bits (80), Expect = 4e-11 Identities = 106/150 (71%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | || |||| || |||| ||||| | | | ||||||| ||| Sbjct 385 GGGTCTTTCTGTCCAGT-GCAGGTACTCCGCATTTTCACACACATGTCTATTTCACCGAG 443 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | | |||||| ||| || ||||| | |||| |||||||| | Sbjct 444 CCCTCTCTCTAAGACAGTGCCCAAATCGTTACGCCTTTCGTACGGGTCAGAACTTACTTG 503 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||| |||||||||| ||||||||||| Sbjct 504 ACAAGGA-TTTCGCTACCCTAGGACCGTTA 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546553315107