Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6995 178 3e-42 seq107061 170 4e-40 seq104164 107 4e-21 seq22357 102 2e-19 >seq6995 Length=4023 Score = 178 bits (196), Expect = 3e-42 Identities = 139/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||| |||||| || |||||||||||||||||| Sbjct 753 CACGCGGCATTG-CTCTGTCAGGCTTTTTTCCATTGCGGAAAATTCCCCACTGCTGCCTC 811 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| ||||||||||| |||||||| ||||||||||||| ||||| | Sbjct 812 CCATAGGAGTCTGGGTCGTGTCTCAGTCCCAGTGTGGTTGATCATCCTCTCGAACCAGAT 871 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || |||| || ||||||| ||| ||| |||||||||||||||||| Sbjct 872 ACTGATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 916 >seq107061 Length=8882 Score = 170 bits (188), Expect = 4e-40 Identities = 149/181 (82%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| |||||||| ||| |||||||||||| || ||||||||||||||| Sbjct 8099 TTCACGACCCGTGGACCTTCTACCAC-CACGCGGCATTG-CTCAGTCAGGCTTTCGCCCA 8156 Query 62 TTGTCCAATATTCCCCACTGCTGCCTC--CCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 ||| || |||||||||| ||||||| || |||||||||||||||||||| ||||||| Sbjct 8157 TTGCGAAAAATTCCCCACTACTGCCTCTCCCATAGGAGTCTGGACCGTGTCTGAGTTCCA 8216 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||| ||||||||| |||| |||||| ||| |||| |||||||||| ||| ||| |||| Sbjct 8217 --GTGGCTGATCATCATCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTC 8274 Query 180 A 180 | Sbjct 8275 A 8275 >seq104164 Length=4651 Score = 107 bits (118), Expect = 4e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 |||||||||| ||||||||||||| |||||| ||| |||| | |||||||||||| ||| Sbjct 2784 TTCCAGTGTGGTTGATCATCCTCTCGGACCAGCTACCGATCATTGCCTTGGTGAGCTATT 2725 Query 175 ACCTCACCAACTAGCTAATCCGAC 198 ||||||||||||||||||| ||| Sbjct 2724 GCCTCACCAACTAGCTAATCAGAC 2701 >seq22357 Length=719 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 ||||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| || || Sbjct 523 CAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTCTTGCC 464 Query 178 TCACCAACTAGCTAATCCGAC 198 ||||||||||||||||| ||| Sbjct 463 TCACCAACTAGCTAATCAGAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070692235040