Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq63161 192 2e-46 seq6994 159 1e-36 seq22728 132 2e-28 seq50997 127 7e-27 seq29936 116 1e-23 seq119293 104 8e-20 seq59433 95.1 4e-17 seq109234 91.5 5e-16 seq19828 91.5 5e-16 seq101547 84.2 8e-14 >seq63161 Length=6697 Score = 192 bits (212), Expect = 2e-46 Identities = 330/472 (70%), Gaps = 33/472 (7%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||||||| || |||||||||||||||||| ||| | | ||| || ||| ||||||| Sbjct 1065 CTGCACCTCAACGCATTTCGGGGAGAACCAACTAGCTCTGGGTTCGAGTGGAATTTCACC 1124 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| | ||| |||| || | | |||||| | ||| |||||| ||||||| || Sbjct 1125 CCTAACTACAACTCATTTGCTGATTCTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT 1184 Query 258 TTACCCGCGCTTCA-ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316 | |||| |||||| ||||| |||||||||||||| | |||||||| || | | Sbjct 1185 TCACCCAAGCTTCATACCTGGTCATGGATAGATCACCCTGGTTCGGGTC--CAT--AGGC 1240 Query 317 ACTCATA--CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTA 369 | | ||| |||||| |||| ||||||||||||||| | ||| ||| Sbjct 1241 AGTGATAATTTCCCTATGAAGACTTGCTTTCGCTACGGCT----TAGTTGGGTTCCCTTA 1296 Query 370 ACCTCGCGAC--ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTG 427 ||| || || | | ||| |||| ||||||||||||| ||||| || || | | Sbjct 1297 ACCAAGCCACTTCCTATGCA---TCGCCAGCTCATTCTTCAACAGGCATGCAGTTA---G 1350 Query 428 GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTC 487 ||| |||| || | || | ||| || | |||||| || ||||||| Sbjct 1351 AGTCCT---AGGCCCTCCTACTTCTTAGGA------GCTTACGGTTTCGTGTTCTATTTC 1401 Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||||| | ||||| ||||| ||| ||||| ||||||||| | | |||||||||||| Sbjct 1402 ACTCCCTGATGGGGGTTCTTTTTACCCTTCCCACACGGTACTACTTCACTATCGGTCACC 1461 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 1462 CAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1513 >seq6994 Length=7142 Score = 159 bits (176), Expect = 1e-36 Identities = 316/462 (68%), Gaps = 28/462 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || ||||| || |||||||||||| | | | ||| || |||| |||||| Sbjct 3817 GCTGCACCTTAACTCATTTTGGAGAGAACCAGCTAGCTCTAGGTTCGAGTGGCATTTCAC 3876 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 || |||||||| | ||| || | | |||||| | ||| |||| |||| || || Sbjct 3877 CCATATCCACAACTTATCTACTAATTCTTCAACATGAGTTAATTCGAACCTCTACTTAGT 3936 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314 | |||| | ||| | || |||||||||||||| | |||||||| | | ||| Sbjct 3937 TTCACCCAAGTGTCATCTTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAGGCAGTG 3996 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||| |||| ||||||||| | || |||| Sbjct 3997 ACAAT----TGCCCTATGAGGACTCACTTTTGCTACGGCTTTGGTA---GGTTCTCTTAA 4049 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | || | ||| ||||||||||||| || |||| |||| | Sbjct 4050 CCAAGC--CACTGCCCATGAGTCGTCAGCTCATTCTTCAACAGACACGTGGTCA---GAG 4104 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| ||| | || | || | ||| || | ||||||| || ||||||||| Sbjct 4105 CCCT----GGCCC-----CTTCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 4155 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| | ||||| ||||||| | |||||||||| |||| | |||||||||||| | Sbjct 4156 TCCCAGATGGGGGTTCTTTTCAGCCTTCCCTCACGTTACTACTTTGCTATCGGTCACTTA 4215 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 ||||||||||| ||| ||| ||| | |||||||||| Sbjct 4216 GGAGTATTTAGCCTTGCAAAGTGCTCCTTGCTGATTCACACG 4257 >seq22728 Length=6672 Score = 132 bits (146), Expect = 2e-28 Identities = 194/270 (72%), Gaps = 22/270 (8%) Strand=Plus/Plus Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT----AACCTCGCGACA 380 ||||||| |||||||||||||||||||| || || || |||| || || Sbjct 27 GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTTCCTTAACCAAGC--CA 81 Query 381 CAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439 | || | | |||| |||||||||||||| |||||||| |||| | ||| || Sbjct 82 CTACCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA---GAGCCCT----GG 134 Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG 499 | | || | || | ||| || | ||||||| || |||||| |||||||| | Sbjct 135 CCC-----CTGCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTTACTCCCCGATGG 189 Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 |||| ||||||| | || ||||||||||||| | |||||||||||||| ||||||||||| Sbjct 190 GGGTTCTTTTCATCCTTTCCTCACGGTACTTCTTCGCTATCGGTCACCCAGGAGTATTTA 249 Query 560 GGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | ||| |||||||| | |||||||| Sbjct 250 GCCTTGCAAGGTGGTCCTTGCTGATTCACA 279 >seq50997 Length=3988 Score = 127 bits (140), Expect = 7e-27 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||||||||||| || ||||||||| ||| | | ||| || |||| |||||| Sbjct 3599 GCTGCGCCTAAATGCATCTCAGGGAGAACCTACTAGCTCTGGGTTCGAGTGGCATTTCAC 3540 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| | | | |||||| | ||| ||||||| ||||||| || Sbjct 3539 CCCTAACCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 3480 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314 | |||| |||||| |||| | |||||||||||| | |||| ||| | | ||| Sbjct 3479 TTCACCCAAGCTTCATCCTGGTCGTGGATAGATCACCCAGGTTCGAGTCCATAGGCAGTG 3420 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| |||||||||| |||| |||| Sbjct 3419 ACAAT----TGCCCTATGAAGACTCGCTTTTGCTATGGCT 3384 >seq29936 Length=17565 Score = 116 bits (128), Expect = 1e-23 Identities = 148/202 (73%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCA----CCTGGTACCTAAAAGGCACTTCAG---- 447 |||||||||||||| || ||||| || | ||||| ||| | | ||| | Sbjct 8389 GGCTCATTCTTCAACAGACACGCGGTTAGAGCCCTGGCCCCTCCCATTGA-TTCTGGCCC 8447 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507 |||| | |||| | || | ||||||| || | ||||||||||||| ||||| ||| Sbjct 8448 CTCCCATTAATTGGAAGCTTACGGTTTCATGTTCCATTTCACTCCCCGATGGGGGTTCTT 8507 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 |||||| |||||||| |||||| | |||||||||||||| |||||||||||| ||| Sbjct 8508 TTCACCCTTCCCTCATGGTACTACTTCGCTATCGGTCACCTAGGAGTATTTAGCCTTGCA 8567 Query 568 GGGTGGTCCCGCCAGATTCACA 589 |||||||| |||||||| Sbjct 8568 AGGTGGTCCTTGTTGATTCACA 8589 >seq119293 Length=487 Score = 104 bits (114), Expect = 8e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 468 CTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATC 409 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||| |||| || ||||||||| |||||||||| Sbjct 408 GGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 372 >seq59433 Length=7438 Score = 95.1 bits (104), Expect = 4e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || | |||||||||||||||||||| | ||| || |||| |||||| Sbjct 6449 GCTGCGCCTCAACGTATTTCGGGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTCAC 6390 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 |||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| Sbjct 6389 TCCTAACCACAACTCATCCGCTAATTCTTCAACATCAGTCGGTTCGGACCTCCAC 6335 >seq109234 Length=1880 Score = 91.5 bits (100), Expect = 5e-16 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 || || || ||||||||||| ||| ||||| |||||||| ||||||| ||||||| Sbjct 277 TTCCATGTTCTATTTCACTCTCCGATGGGGGTTCTTTTCACACTTCCCTCGCGGTACTAC 336 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 | | |||||||||||| ||||||||||| ||| |||||||| | | ||||||| Sbjct 337 TTCACTATCGGTCACCCAGGAGTATTTAACCTTGCAAGGTGGTCCTTGCTAACTCACACG 396 Query 592 AAATTTCA 599 ||| || Sbjct 397 GGATTCCA 404 >seq19828 Length=5823 Score = 91.5 bits (100), Expect = 5e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| ||||||||| ||||||||||||||| | |||||||||||||| |||||||||| Sbjct 5783 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 5724 Query 559 AGGCTTAACGGGTGGTCC 576 || ||| |||||||| Sbjct 5723 AGCCTTGCAAGGTGGTCC 5706 >seq101547 Length=7475 Score = 84.2 bits (92), Expect = 8e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541 |||||||||||||| ||||| ||||||||| ||||||||||||||| | |||||||| Sbjct 7371 TATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCG 7430 Query 542 GTCACC 547 |||||| Sbjct 7431 GTCACC 7436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1815382655232