Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq63161 192 2e-46
seq6994 159 1e-36
seq22728 132 2e-28
seq50997 127 7e-27
seq29936 116 1e-23
seq119293 104 8e-20
seq59433 95.1 4e-17
seq109234 91.5 5e-16
seq19828 91.5 5e-16
seq101547 84.2 8e-14
>seq63161
Length=6697
Score = 192 bits (212), Expect = 2e-46
Identities = 330/472 (70%), Gaps = 33/472 (7%)
Strand=Plus/Plus
Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197
|||||||| || |||||||||||||||||| ||| | | ||| || ||| |||||||
Sbjct 1065 CTGCACCTCAACGCATTTCGGGGAGAACCAACTAGCTCTGGGTTCGAGTGGAATTTCACC 1124
Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257
|||| | ||| |||| || | | |||||| | ||| |||||| ||||||| ||
Sbjct 1125 CCTAACTACAACTCATTTGCTGATTCTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT 1184
Query 258 TTACCCGCGCTTCA-ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316
| |||| |||||| ||||| |||||||||||||| | |||||||| || | |
Sbjct 1185 TCACCCAAGCTTCATACCTGGTCATGGATAGATCACCCTGGTTCGGGTC--CAT--AGGC 1240
Query 317 ACTCATA--CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTA 369
| | ||| |||||| |||| ||||||||||||||| | ||| |||
Sbjct 1241 AGTGATAATTTCCCTATGAAGACTTGCTTTCGCTACGGCT----TAGTTGGGTTCCCTTA 1296
Query 370 ACCTCGCGAC--ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTG 427
||| || || | | ||| |||| ||||||||||||| ||||| || || | |
Sbjct 1297 ACCAAGCCACTTCCTATGCA---TCGCCAGCTCATTCTTCAACAGGCATGCAGTTA---G 1350
Query 428 GTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTC 487
||| |||| || | || | ||| || | |||||| || |||||||
Sbjct 1351 AGTCCT---AGGCCCTCCTACTTCTTAGGA------GCTTACGGTTTCGTGTTCTATTTC 1401
Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547
|||||| | ||||| ||||| ||| ||||| ||||||||| | | ||||||||||||
Sbjct 1402 ACTCCCTGATGGGGGTTCTTTTTACCCTTCCCACACGGTACTACTTCACTATCGGTCACC 1461
Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 1462 CAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1513
>seq6994
Length=7142
Score = 159 bits (176), Expect = 1e-36
Identities = 316/462 (68%), Gaps = 28/462 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||||||| || ||||| || |||||||||||| | | | ||| || |||| ||||||
Sbjct 3817 GCTGCACCTTAACTCATTTTGGAGAGAACCAGCTAGCTCTAGGTTCGAGTGGCATTTCAC 3876
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
|| |||||||| | ||| || | | |||||| | ||| |||| |||| || ||
Sbjct 3877 CCATATCCACAACTTATCTACTAATTCTTCAACATGAGTTAATTCGAACCTCTACTTAGT 3936
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314
| |||| | ||| | || |||||||||||||| | |||||||| | | |||
Sbjct 3937 TTCACCCAAGTGTCATCTTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAGGCAGTG 3996
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||| |||| ||||||||| | || ||||
Sbjct 3997 ACAAT----TGCCCTATGAGGACTCACTTTTGCTACGGCTTTGGTA---GGTTCTCTTAA 4049
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | || | ||| ||||||||||||| || |||| |||| |
Sbjct 4050 CCAAGC--CACTGCCCATGAGTCGTCAGCTCATTCTTCAACAGACACGTGGTCA---GAG 4104
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| ||| | || | || | ||| || | ||||||| || |||||||||
Sbjct 4105 CCCT----GGCCC-----CTTCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 4155
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||| | ||||| ||||||| | |||||||||| |||| | |||||||||||| |
Sbjct 4156 TCCCAGATGGGGGTTCTTTTCAGCCTTCCCTCACGTTACTACTTTGCTATCGGTCACTTA 4215
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591
||||||||||| ||| ||| ||| | ||||||||||
Sbjct 4216 GGAGTATTTAGCCTTGCAAAGTGCTCCTTGCTGATTCACACG 4257
>seq22728
Length=6672
Score = 132 bits (146), Expect = 2e-28
Identities = 194/270 (72%), Gaps = 22/270 (8%)
Strand=Plus/Plus
Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT----AACCTCGCGACA 380
||||||| |||||||||||||||||||| || || || |||| || ||
Sbjct 27 GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTTCCTTAACCAAGC--CA 81
Query 381 CAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439
| || | | |||| |||||||||||||| |||||||| |||| | ||| ||
Sbjct 82 CTACCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA---GAGCCCT----GG 134
Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG 499
| | || | || | ||| || | ||||||| || |||||| |||||||| |
Sbjct 135 CCC-----CTGCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTTACTCCCCGATGG 189
Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559
|||| ||||||| | || ||||||||||||| | |||||||||||||| |||||||||||
Sbjct 190 GGGTTCTTTTCATCCTTTCCTCACGGTACTTCTTCGCTATCGGTCACCCAGGAGTATTTA 249
Query 560 GGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| ||| |||||||| | ||||||||
Sbjct 250 GCCTTGCAAGGTGGTCCTTGCTGATTCACA 279
>seq50997
Length=3988
Score = 127 bits (140), Expect = 7e-27
Identities = 161/220 (73%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||||||||||| || ||||||||| ||| | | ||| || |||| ||||||
Sbjct 3599 GCTGCGCCTAAATGCATCTCAGGGAGAACCTACTAGCTCTGGGTTCGAGTGGCATTTCAC 3540
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| | | | |||||| | ||| ||||||| ||||||| ||
Sbjct 3539 CCCTAACCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 3480
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314
| |||| |||||| |||| | |||||||||||| | |||| ||| | | |||
Sbjct 3479 TTCACCCAAGCTTCATCCTGGTCGTGGATAGATCACCCAGGTTCGAGTCCATAGGCAGTG 3420
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
|| | ||||||| |||||||||| |||| ||||
Sbjct 3419 ACAAT----TGCCCTATGAAGACTCGCTTTTGCTATGGCT 3384
>seq29936
Length=17565
Score = 116 bits (128), Expect = 1e-23
Identities = 148/202 (73%), Gaps = 9/202 (4%)
Strand=Plus/Plus
Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCA----CCTGGTACCTAAAAGGCACTTCAG---- 447
|||||||||||||| || ||||| || | ||||| ||| | | ||| |
Sbjct 8389 GGCTCATTCTTCAACAGACACGCGGTTAGAGCCCTGGCCCCTCCCATTGA-TTCTGGCCC 8447
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507
|||| | |||| | || | ||||||| || | ||||||||||||| ||||| |||
Sbjct 8448 CTCCCATTAATTGGAAGCTTACGGTTTCATGTTCCATTTCACTCCCCGATGGGGGTTCTT 8507
Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567
|||||| |||||||| |||||| | |||||||||||||| |||||||||||| |||
Sbjct 8508 TTCACCCTTCCCTCATGGTACTACTTCGCTATCGGTCACCTAGGAGTATTTAGCCTTGCA 8567
Query 568 GGGTGGTCCCGCCAGATTCACA 589
|||||||| ||||||||
Sbjct 8568 AGGTGGTCCTTGTTGATTCACA 8589
>seq119293
Length=487
Score = 104 bits (114), Expect = 8e-20
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540
||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 468 CTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATC 409
Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577
||||| |||| || ||||||||| ||||||||||
Sbjct 408 GGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 372
>seq59433
Length=7438
Score = 95.1 bits (104), Expect = 4e-17
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || | |||||||||||||||||||| | ||| || |||| ||||||
Sbjct 6449 GCTGCGCCTCAACGTATTTCGGGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTCAC 6390
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251
|||| ||||| |||||| || | | |||||| | ||| ||||||| |||||||
Sbjct 6389 TCCTAACCACAACTCATCCGCTAATTCTTCAACATCAGTCGGTTCGGACCTCCAC 6335
>seq109234
Length=1880
Score = 91.5 bits (100), Expect = 5e-16
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531
|| || || ||||||||||| ||| ||||| |||||||| ||||||| |||||||
Sbjct 277 TTCCATGTTCTATTTCACTCTCCGATGGGGGTTCTTTTCACACTTCCCTCGCGGTACTAC 336
Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591
| | |||||||||||| ||||||||||| ||| |||||||| | | |||||||
Sbjct 337 TTCACTATCGGTCACCCAGGAGTATTTAACCTTGCAAGGTGGTCCTTGCTAACTCACACG 396
Query 592 AAATTTCA 599
||| ||
Sbjct 397 GGATTCCA 404
>seq19828
Length=5823
Score = 91.5 bits (100), Expect = 5e-16
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
||||| ||||||||| ||||||||||||||| | |||||||||||||| ||||||||||
Sbjct 5783 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 5724
Query 559 AGGCTTAACGGGTGGTCC 576
|| ||| ||||||||
Sbjct 5723 AGCCTTGCAAGGTGGTCC 5706
>seq101547
Length=7475
Score = 84.2 bits (92), Expect = 8e-14
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541
|||||||||||||| ||||| ||||||||| ||||||||||||||| | ||||||||
Sbjct 7371 TATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCG 7430
Query 542 GTCACC 547
||||||
Sbjct 7431 GTCACC 7436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1815382655232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |