Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq22728 138 3e-30 seq63161 134 3e-29 seq29936 118 3e-24 seq6994 116 9e-24 seq109234 107 5e-21 seq19828 96.9 9e-18 seq119293 93.3 1e-16 seq101547 78.8 2e-12 >seq22728 Length=6672 Score = 138 bits (152), Expect = 3e-30 Identities = 181/245 (74%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| |||||||||||| ||||||| |||| | || |||| | |||||| Sbjct 27 GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTTCCTTAACCAA-GCCACTA 84 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254 || |||||| | | |||| | ||| ||| ||||||||| | | | || || Sbjct 85 CCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAG--AGCCCTGGCCCCTGCC 142 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||| || |||||||||| | ||||||| ||||||| | |||||||||||| Sbjct 143 ACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTTACTCCCCGATG-GGGGTTCTTTTCA 201 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 | || |||||||||||| ||| |||||||||| ||| |||||||||||||| | | | Sbjct 202 TCCTTTCCTCACGGTACTTCTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGT 261 Query 375 GGTCC 379 ||||| Sbjct 262 GGTCC 266 >seq63161 Length=6697 Score = 134 bits (148), Expect = 3e-29 Identities = 249/353 (71%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| |||| |||||| |||||| ||||| | |||||| ||| ||||| Sbjct 1148 TTCTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TCACCCAAGCTTCATACCTGGT 1206 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| | || |||||| || | || || || ||||| |||| Sbjct 1207 CAT-GGATAGATCACCCTGGTT-CGGGTCCATAGGC-AGTGA-TAATTTCCCTATGAAGA 1262 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 || ||||| ||||||| || | ||| |||| | |||||| || |||| Sbjct 1263 CTTGCTTT-CGCTACGGCTTAGTTGGGTTCCCTTAACCAA-GCCACTTCCTATGCATCGC 1320 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266 | |||| | ||| ||| | ||||| | | | | |||| ||| ||| | Sbjct 1321 CAGCTCATTCTTCAACAGGCATGCAGTTAGAGTCCTAGGCC--CTCCTACTTCTTAGGAG 1378 Query 267 CATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 326 | ||||||||| | |||||||||||||| | ||||||||||| || ||||| ||| Sbjct 1379 CTTACGGTTTCGTGTTCTATTTCACTCCCTGATG-GGGGTTCTTTTTACCCTTCCCACAC 1437 Query 327 GGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||||||| |||||||||||||| ||| |||||||||||||| | | |||||| Sbjct 1438 GGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 1490 >seq29936 Length=17565 Score = 118 bits (130), Expect = 3e-24 Identities = 105/130 (81%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| | ||| | || |||||||||| | || |||||||||||| | |||||||| Sbjct 8448 CTCCCATTAATTGGAAGCTTACGGTTTCATGTTCCATTTCACTCCCCGATG-GGGGTTCT 8506 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||| ||||||| ||| |||||||||| || |||||||||||||| Sbjct 8507 TTTCACCCTTCCCTCATGGTACTACTTCGCTATCGGTCACCTAGGAGTATTTAGCCTTGC 8566 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 8567 AAGGTGGTCC 8576 >seq6994 Length=7142 Score = 116 bits (128), Expect = 9e-24 Identities = 243/347 (70%), Gaps = 14/347 (4%) Strand=Plus/Plus Query 24 CTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAAC 83 |||| || |||||| ||| |||| |||| | ||||| | |||||| | ||| | Sbjct 3897 CTAA-TTCTTCAACATGAGTTAATTCGAACCTCTACTTAGTT-TCACCCAAG-TGTCATC 3953 Query 84 CTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAG 143 || ||| ||||||||| ||| | || |||||| || | || ||| | |||||| Sbjct 3954 TTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAGGC-AGTGACAATT-GCCCTAT 4009 Query 144 TAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAA 201 | ||||| ||||| |||||| || || ||| |||| | ||||||| || | Sbjct 4010 GAGGACTCACTTTT-GCTACGGCTTTGGTAGGTTCTCTTAACCAA-GCCACTGCCCATGA 4067 Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 |||| | |||| | ||| || ||| |||| | | | || ||||||||| Sbjct 4068 GTCGTCAGCTCATTCTTCAACAGACACGTGGTCAG--AGCCCTGGCCCCTTCCACTGCTT 4125 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 | || |||||||||| | |||||||||||||| | |||||||||||| | |||| Sbjct 4126 GGGAGCTTACGGTTTCATGTTCTATTTCACTCCCAGATG-GGGGTTCTTTTCAGCCTTCC 4184 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||| ||||| || |||||||||| | || |||||||||||||| Sbjct 4185 CTCACGTTACTACTTTGCTATCGGTCACTTAGGAGTATTTAGCCTTG 4231 >seq109234 Length=1880 Score = 107 bits (118), Expect = 5e-21 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 251 TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310 ||||| |||||| || ||| || || | |||||||||||| || | ||||||||| Sbjct 254 TCCCATTGCTTGGGAGCTTACAATTCCATGTTCTATTTCACTCTCCGATG-GGGGTTCTT 312 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| | ||||||| |||||||| |||||||||||||| ||| |||||||| ||||| | Sbjct 313 TTCACACTTCCCTCGCGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAACCTTGCA 372 Query 371 GGATGGTCC 379 | |||||| Sbjct 373 AGGTGGTCC 381 >seq19828 Length=5823 Score = 96.9 bits (106), Expect = 9e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 5783 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 5724 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 5723 AGCCTTGCAAGGTGGTCC 5706 >seq119293 Length=487 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| ||||||| | ||||||||||| |||||||||||||||||| || | ||| Sbjct 469 TCTATTGCACTCCC-TAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTA 411 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||| | || | || |||| ||| |||| ||||||||| Sbjct 410 TCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCC 370 >seq101547 Length=7475 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 284 TATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATC 343 ||||||||||||| | |||||||||||| || |||||||||||||||| ||| ||||| Sbjct 7371 TATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATC 7429 Query 344 GGTCA 348 ||||| Sbjct 7430 GGTCA 7434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240085334912