Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq6995 140 6e-31 seq107061 109 1e-21 seq104164 82.4 2e-13 seq22357 73.4 8e-11 >seq6995 Length=4023 Score = 140 bits (154), Expect = 6e-31 Identities = 210/294 (71%), Gaps = 16/294 (5%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| |||||| | || || ||||||||||||||||| |||||||||||| || Sbjct 770 TCAGGCTTTTTTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGTCG 829 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| ||||| | ||| |||||| || | ||| |||| || |||||| Sbjct 830 TGTCTCAGTCCCAGTGTGGTTGATCATCCTCTCGAACCAGATACTGATCATCACCTTGGT 889 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 |||||| ||||||||||| ||||| | | | ||||| | || || | | | Sbjct 890 AAGCTATTGCCTCACCAACTAGCTAATTAGACACAAGCCCGCCCTT-AGGTAGA-----T 943 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | || | | | ||||| | | || | ||||||| ||||||||| | Sbjct 944 TCCTC-----CTTTTAC--TCCTCAGCC--TACGTGGTATTAATAGTCGTTTCCAGCTTT 994 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306 | |||| ||| || |||||||| || | | ||||||||||||| |||||||| Sbjct 995 TGTTCCCCTCCCAAGGGCAGGTT-CTTATGCTTTACTCACCCGTCTGCCACTAA 1047 >seq107061 Length=8882 Score = 109 bits (120), Expect = 1e-21 Identities = 107/136 (79%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTC--CCGTAGGAGTCTGGGC 70 ||||| |||| ||||||| | || || ||||||| ||||||| || ||||||||||| | Sbjct 8142 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGCCTCTCCCATAGGAGTCTGGAC 8201 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||| ||| ||| ||||| | ||| | |||| | || ||||| |||| ||| |||| Sbjct 8202 CGTGTCTGAGTTCCA--GTGGCTGATCATCATCTCGGACCAGCTACTGATCATCGCCTTG 8259 Query 131 GTGGGCTATTATCTCA 146 || |||||| |||| Sbjct 8260 GTAAGCTATTGCCTCA 8275 >seq104164 Length=4651 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 83 CCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTAT 142 ||| ||||| | ||| |||||| | || |||||||||| | | ||||||| |||||| Sbjct 2782 CCAGTGTGGTTGATCATCCTCTCGGACCAGCTACCGATCATTGCCTTGGTGAGCTATTGC 2723 Query 143 CTCACCAACTACCTAATCGGCCGCGAGCCC 172 ||||||||||| |||||| | ||| ||||| Sbjct 2722 CTCACCAACTAGCTAATCAGACGCAAGCCC 2693 >seq22357 Length=719 Score = 73.4 bits (80), Expect = 8e-11 Identities = 69/88 (78%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||||| | ||| |||||| | || ||||| |||| ||| |||||| ||| || | Sbjct 523 CAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTCTTGCC 464 Query 144 TCACCAACTACCTAATCGGCCGCGAGCC 171 |||||||||| |||||| | ||| |||| Sbjct 463 TCACCAACTAGCTAATCAGACGCAAGCC 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997182021888