Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq6995 140 6e-31
seq107061 109 1e-21
seq104164 82.4 2e-13
seq22357 73.4 8e-11
>seq6995
Length=4023
Score = 140 bits (154), Expect = 6e-31
Identities = 210/294 (71%), Gaps = 16/294 (5%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| ||| |||||| | || || ||||||||||||||||| |||||||||||| ||
Sbjct 770 TCAGGCTTTTTTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGTCG 829
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||||||| ||||| | ||| |||||| || | ||| |||| || ||||||
Sbjct 830 TGTCTCAGTCCCAGTGTGGTTGATCATCCTCTCGAACCAGATACTGATCATCACCTTGGT 889
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192
|||||| ||||||||||| ||||| | | | ||||| | || || | | |
Sbjct 890 AAGCTATTGCCTCACCAACTAGCTAATTAGACACAAGCCCGCCCTT-AGGTAGA-----T 943
Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252
| || | | | ||||| | | || | ||||||| ||||||||| |
Sbjct 944 TCCTC-----CTTTTAC--TCCTCAGCC--TACGTGGTATTAATAGTCGTTTCCAGCTTT 994
Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306
| |||| ||| || |||||||| || | | ||||||||||||| ||||||||
Sbjct 995 TGTTCCCCTCCCAAGGGCAGGTT-CTTATGCTTTACTCACCCGTCTGCCACTAA 1047
>seq107061
Length=8882
Score = 109 bits (120), Expect = 1e-21
Identities = 107/136 (79%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTC--CCGTAGGAGTCTGGGC 70
||||| |||| ||||||| | || || ||||||| ||||||| || ||||||||||| |
Sbjct 8142 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGCCTCTCCCATAGGAGTCTGGAC 8201
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
||||||| ||| ||| ||||| | ||| | |||| | || ||||| |||| ||| ||||
Sbjct 8202 CGTGTCTGAGTTCCA--GTGGCTGATCATCATCTCGGACCAGCTACTGATCATCGCCTTG 8259
Query 131 GTGGGCTATTATCTCA 146
|| |||||| ||||
Sbjct 8260 GTAAGCTATTGCCTCA 8275
>seq104164
Length=4651
Score = 82.4 bits (90), Expect = 2e-13
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 83 CCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTAT 142
||| ||||| | ||| |||||| | || |||||||||| | | ||||||| ||||||
Sbjct 2782 CCAGTGTGGTTGATCATCCTCTCGGACCAGCTACCGATCATTGCCTTGGTGAGCTATTGC 2723
Query 143 CTCACCAACTACCTAATCGGCCGCGAGCCC 172
||||||||||| |||||| | ||| |||||
Sbjct 2722 CTCACCAACTAGCTAATCAGACGCAAGCCC 2693
>seq22357
Length=719
Score = 73.4 bits (80), Expect = 8e-11
Identities = 69/88 (78%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143
|| |||||| | ||| |||||| | || ||||| |||| ||| |||||| ||| || |
Sbjct 523 CAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTCTTGCC 464
Query 144 TCACCAACTACCTAATCGGCCGCGAGCC 171
|||||||||| |||||| | ||| ||||
Sbjct 463 TCACCAACTAGCTAATCAGACGCAAGCC 436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 997182021888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |