Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq63161 149 1e-33 seq6994 131 4e-28 seq113665 105 2e-20 seq79314 104 5e-20 seq30692 89.7 1e-15 seq88897 78.8 2e-12 seq81519 78.8 2e-12 seq9024 78.8 2e-12 seq78510 77.0 8e-12 seq111591 73.4 9e-11 seq100152 73.4 9e-11 >seq63161 Length=6697 Score = 149 bits (164), Expect = 1e-33 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| ||||| | ||| ||||||| | | || ||||| Sbjct 722 CCACAGCTTCGGCAGATCGCTTA-GCCCCATT-CATCTTCGGCGCAAGAGCGCTCGACCA 779 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||| ||||||||||||| || ||||||| | | ||| || ||||||||| Sbjct 780 GTGAGCTATTACACACTCTTTCAAGGGTGCCTGCTTCTAGGAGAACATCTTGGTTGTCTT 839 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||| || | || ||||||||||||| || |||| ||| Sbjct 840 TGCACCCCTACCTCCTTTATCACAAAGCGATCATTTAGGGGCCTTAGATGGTGATTCGGG 899 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 900 TTGTTTCCCTCTCG 913 >seq6994 Length=7142 Score = 131 bits (144), Expect = 4e-28 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||||||| ||| |||| ||| | | ||| |||| || | | |||| | || Sbjct 3476 CCACAACTTCGGCAGATCGCTTA-GCCATGTT-CATCTTCGGTGCAGGAGCACTCAATCA 3533 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||| | | ||| ||||| | |||||||||| | || |||||||||| ||||| Sbjct 3534 GTGAGCTATTGCACTCTCATTCAAAGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 3593 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | || | || || ||| || |||| | || |||||||||||||| | ||||| ||| Sbjct 3594 CACACCCTTACCTCATTTATCATTGAGCGATCATTTAGGGGCCTTAGCAGGTGATCCGGG 3653 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 3654 TTGTTTCCCTCTCG 3667 >seq113665 Length=3372 Score = 105 bits (116), Expect = 2e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||| ||||||||||||||||||||||| |||| |||||||||| | || ||||||||| Sbjct 1470 CTTGATCAGTGAGCTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 1529 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364 | ||||| ||| | | || |||||| ||||||| | || |||| Sbjct 1530 GCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGATCATTTAG 1575 >seq79314 Length=8504 Score = 104 bits (114), Expect = 5e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| ||||||||| | || |||||||||| ||||| ||| | | || |||||| || Sbjct 3707 AAGGGAGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCA 3766 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| | || |||||||||||||||| ||||| | ||| ||||||||||| Sbjct 3767 CTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGAGCTATTTCCCTCTCG 3818 >seq30692 Length=7291 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| |||||| |||| || ||| || ||||| | Sbjct 2040 GCTTCGGTGAATCACTTGAGCCCTAATACATTTTCGGTGCCATGGAG---CTAGACCAAT 2096 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||| Sbjct 2097 GAGCTGTTACGTTTTCTTGAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTC 2152 >seq88897 Length=7521 Score = 78.8 bits (86), Expect = 2e-12 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-AC 337 |||||||||||||| | ||| ||| |||| || || |||||||||| ||| |||| || Sbjct 998 GCACTCTTTCAAGGGTAGCTACTTATAAGCAAATCTTCTGGTTGTCTTTGCA-CTCCTAC 940 Query 338 ATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCC 394 || ||| |||||| | | |||||||||||| | | | ||||||| | ||||| Sbjct 939 CTCTTTTAATACTGAGCAATTATTTAGGGGCCTTAACCGTTAATCTGGGTTATTTCC 883 >seq81519 Length=6433 Score = 78.8 bits (86), Expect = 2e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||| |||||||||||| |||||||||||||| ||| ||| || ||| | | Sbjct 2948 AAGGATGCATGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCGTTTTCAA 3007 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 || ||| | | |||| ||||||| | ||||| || |||||||||||| Sbjct 3008 CTAAGTGATTGCGTAGGAACCTTAGCGTACGATCTAGGTTGTTTCCCTCTC 3058 >seq9024 Length=6287 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340 |||||| ||||| ||| |||||| | || |||||| ||| | ||| | | |||||| || Sbjct 2730 ACTCTTCCAAGGGTGGTTGCTTCTAGGCAAACCTCTTGGCTATCTCAGTACCTCCACCTC 2671 Query 341 CTTTCCCACTGAGTCACCACTTAGG--GGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||| || | || | || || | |||||| |||| || ||| || ||||||||||| Sbjct 2670 CTTTATCATTTAGCAATCATTTTAGCTGGCCTTGGCTGGTGTTCTAGGTTGTTTCCCTCT 2611 Query 399 CG 400 || Sbjct 2610 CG 2609 >seq78510 Length=8388 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 || || ||||||| ||||||||||||||||| ||| |||||| | || ||| |||||||| Sbjct 1811 GATCAATGAGCTACTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACATCCTGGTT 1870 Query 322 GTCTACGCAACT 333 |||| ||| || Sbjct 1871 GTCTTTGCACCT 1882 >seq111591 Length=5247 Score = 73.4 bits (80), Expect = 9e-11 Identities = 78/103 (76%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357 |||||||||||| |||||||||||||| ||| ||| |||||| ||| | ||| | Sbjct 2768 TGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCAGTAAGTGAT 2709 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| ||||||| | || ||| ||||| ||||||| Sbjct 2708 TGCTTAGGGACCTTAGCGTACAATTTGGTATGTTTTCCTCTCG 2666 >seq100152 Length=11404 Score = 73.4 bits (80), Expect = 9e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 |||||||||||||||||||| | |||||||||||| ||| ||| |||||| |||| Sbjct 3875 AGGATGGCTGCTTCCAAGCCCATCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCAC 3816 Query 350 TGAGTCACCACTTAGGGGCCTTAGC 374 | ||| | |||| || ||||||| Sbjct 3815 TAAGTGATTGCTTAAGGACCTTAGC 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176163410432