Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq63161 149 1e-33
seq6994 131 4e-28
seq113665 105 2e-20
seq79314 104 5e-20
seq30692 89.7 1e-15
seq88897 78.8 2e-12
seq81519 78.8 2e-12
seq9024 78.8 2e-12
seq78510 77.0 8e-12
seq111591 73.4 9e-11
seq100152 73.4 9e-11
>seq63161
Length=6697
Score = 149 bits (164), Expect = 1e-33
Identities = 151/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||||| ||| |||| ||||| | ||| ||||||| | | || |||||
Sbjct 722 CCACAGCTTCGGCAGATCGCTTA-GCCCCATT-CATCTTCGGCGCAAGAGCGCTCGACCA 779
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||| ||||||||||||| || ||||||| | | ||| || |||||||||
Sbjct 780 GTGAGCTATTACACACTCTTTCAAGGGTGCCTGCTTCTAGGAGAACATCTTGGTTGTCTT 839
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| ||| || | || ||||||||||||| || |||| |||
Sbjct 840 TGCACCCCTACCTCCTTTATCACAAAGCGATCATTTAGGGGCCTTAGATGGTGATTCGGG 899
Query 387 CTGTTTCCCTCTCG 400
|||||||||||||
Sbjct 900 TTGTTTCCCTCTCG 913
>seq6994
Length=7142
Score = 131 bits (144), Expect = 4e-28
Identities = 147/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||| ||||||| ||| |||| ||| | | ||| |||| || | | |||| | ||
Sbjct 3476 CCACAACTTCGGCAGATCGCTTA-GCCATGTT-CATCTTCGGTGCAGGAGCACTCAATCA 3533
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||| | | ||| ||||| | |||||||||| | || |||||||||| |||||
Sbjct 3534 GTGAGCTATTGCACTCTCATTCAAAGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 3593
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
| || | || || ||| || |||| | || |||||||||||||| | ||||| |||
Sbjct 3594 CACACCCTTACCTCATTTATCATTGAGCGATCATTTAGGGGCCTTAGCAGGTGATCCGGG 3653
Query 387 CTGTTTCCCTCTCG 400
|||||||||||||
Sbjct 3654 TTGTTTCCCTCTCG 3667
>seq113665
Length=3372
Score = 105 bits (116), Expect = 2e-20
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
||||| ||||||||||||||||||||||| |||| |||||||||| | || |||||||||
Sbjct 1470 CTTGATCAGTGAGCTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 1529
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364
| ||||| ||| | | || |||||| ||||||| | || ||||
Sbjct 1530 GCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGATCATTTAG 1575
>seq79314
Length=8504
Score = 104 bits (114), Expect = 5e-20
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348
|||| ||||||||| | || |||||||||| ||||| ||| | | || |||||| ||
Sbjct 3707 AAGGGAGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCA 3766
Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||||| | || |||||||||||||||| ||||| | ||| |||||||||||
Sbjct 3767 CTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGAGCTATTTCCCTCTCG 3818
>seq30692
Length=7291
Score = 89.7 bits (98), Expect = 1e-15
Identities = 90/116 (78%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| |||||| |||| || ||| || ||||| |
Sbjct 2040 GCTTCGGTGAATCACTTGAGCCCTAATACATTTTCGGTGCCATGGAG---CTAGACCAAT 2096
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324
||||| ||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 2097 GAGCTGTTACGTTTTCTTGAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTC 2152
>seq88897
Length=7521
Score = 78.8 bits (86), Expect = 2e-12
Identities = 89/117 (76%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-AC 337
|||||||||||||| | ||| ||| |||| || || |||||||||| ||| |||| ||
Sbjct 998 GCACTCTTTCAAGGGTAGCTACTTATAAGCAAATCTTCTGGTTGTCTTTGCA-CTCCTAC 940
Query 338 ATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCC 394
|| ||| |||||| | | |||||||||||| | | | ||||||| | |||||
Sbjct 939 CTCTTTTAATACTGAGCAATTATTTAGGGGCCTTAACCGTTAATCTGGGTTATTTCC 883
>seq81519
Length=6433
Score = 78.8 bits (86), Expect = 2e-12
Identities = 84/111 (76%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348
||||||| |||||||||||| |||||||||||||| ||| ||| || ||| | |
Sbjct 2948 AAGGATGCATGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCGTTTTCAA 3007
Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399
|| ||| | | |||| ||||||| | ||||| || ||||||||||||
Sbjct 3008 CTAAGTGATTGCGTAGGAACCTTAGCGTACGATCTAGGTTGTTTCCCTCTC 3058
>seq9024
Length=6287
Score = 78.8 bits (86), Expect = 2e-12
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 281 ACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC 340
|||||| ||||| ||| |||||| | || |||||| ||| | ||| | | |||||| ||
Sbjct 2730 ACTCTTCCAAGGGTGGTTGCTTCTAGGCAAACCTCTTGGCTATCTCAGTACCTCCACCTC 2671
Query 341 CTTTCCCACTGAGTCACCACTTAGG--GGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|||| || | || | || || | |||||| |||| || ||| || |||||||||||
Sbjct 2670 CTTTATCATTTAGCAATCATTTTAGCTGGCCTTGGCTGGTGTTCTAGGTTGTTTCCCTCT 2611
Query 399 CG 400
||
Sbjct 2610 CG 2609
>seq78510
Length=8388
Score = 77.0 bits (84), Expect = 8e-12
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321
|| || ||||||| ||||||||||||||||| ||| |||||| | || ||| ||||||||
Sbjct 1811 GATCAATGAGCTACTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAACATCCTGGTT 1870
Query 322 GTCTACGCAACT 333
|||| ||| ||
Sbjct 1871 GTCTTTGCACCT 1882
>seq111591
Length=5247
Score = 73.4 bits (80), Expect = 9e-11
Identities = 78/103 (76%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357
|||||||||||| |||||||||||||| ||| ||| |||||| ||| | ||| |
Sbjct 2768 TGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCAGTAAGTGAT 2709
Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||||||| ||||||| | || ||| ||||| |||||||
Sbjct 2708 TGCTTAGGGACCTTAGCGTACAATTTGGTATGTTTTCCTCTCG 2666
>seq100152
Length=11404
Score = 73.4 bits (80), Expect = 9e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
|||||||||||||||||||| | |||||||||||| ||| ||| |||||| ||||
Sbjct 3875 AGGATGGCTGCTTCCAAGCCCATCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCAC 3816
Query 350 TGAGTCACCACTTAGGGGCCTTAGC 374
| ||| | |||| || |||||||
Sbjct 3815 TAAGTGATTGCTTAAGGACCTTAGC 3791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176163410432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |