Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq6995 82.4 1e-13 seq104528 75.2 2e-11 >seq6995 Length=4023 Score = 82.4 bits (90), Expect = 1e-13 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || || ||| |||||||| | || ||||||||||||||| || || | |||||| Sbjct 452 GCTTTTGCCGTTGGTGTTCTTTTCGATCTCTACGCATTTCACCACTCCATCAGAAATTCC 511 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 || || || | | |||| ||| |||||| | | | ||||||||||| Sbjct 512 CTTTACCCCTACCGTACTCCAGATTGGTAGTTTCCACCGATTGTCCAGGGTTGAGCCCTG 571 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 || || ||| | ||||| || || ||| |||||| | |||| | |||| || Sbjct 572 AGATTCGACAGCAGACTTAAAAAGCCACCCACAGAAGCTTTACGCTCAATCATTCCG-AT 630 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||| ||| | ||||| ||||||||||||| |||||| | |||||||| Sbjct 631 AACGCTTGCATCCTCTATCTTACCACGGCTGCTGGCACAGAGTTAGTTGATACTTATTCC 690 >seq104528 Length=708 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 205 ACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTA 264 || |||||| | | ||||||| |||||| ||| || |||| |||||||||||||| | Sbjct 572 ACGCCCAATCATTTCGGATAATGCTTGCATCCTCTGTCTTACTGCGGCTGCTGGCACAGA 513 Query 265 GTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||||||||| ||| || Sbjct 512 GTTAGCCAATGCTTATTCCCCAGATA 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827820518203