Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq51075 116 6e-24 seq78576 107 3e-21 seq69260 102 1e-19 seq90427 95.1 2e-17 seq63160 95.1 2e-17 >seq51075 Length=6161 Score = 116 bits (128), Expect = 6e-24 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||||| Sbjct 3677 ACCGAACTGTCTCACGACATTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGC 3618 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAG 255 | || |||||| || |||| ||||||||| Sbjct 3617 CAAATCCTTGGAACATACTACAGCCCCAG 3589 >seq78576 Length=3837 Score = 107 bits (118), Expect = 3e-21 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 || |||| |||||||| | || | | |||||||||||||| | | || |||||||| Sbjct 1612 AATTGGTACACCAGAGATGCATCTTGCTCAGTCCTCTCGTACTAGGAAAAGGTCCTCTCA 1553 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | || | |||||| | ||| | | ||||| |||| ||||||||| |||||| || Sbjct 1552 ATACTCTAATGCCCACACAGAATATGACCTGAACTATCTCACGACGTTCTAAACCCAACT 1493 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 ||| || ||||||||| | ||||||||||||| ||| | |||| || Sbjct 1492 TACGTACCACTTTAATGGACAAACAGCCCAACCCGTGGAATATACTACA 1444 >seq69260 Length=1751 Score = 102 bits (112), Expect = 1e-19 Identities = 98/126 (78%), Gaps = 10/126 (8%) Strand=Plus/Minus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 ||||||||||||| ||||| ||| || |||| |||| || ||||| || |||||| Sbjct 768 TCCCGGTCCTCTCATACTAGGGAAAGGTCCTTTCAATGCTCTAACGCC-ACACCGGATAT 710 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||||||| |||||| | || ||||||||||||||| ||| ||||||||||| Sbjct 709 GGACCGAATTGTCTCACCACATTCTGAACCCAGCTCACGT---------ATGGGCGAACA 659 Query 225 GCCCAA 230 |||||| Sbjct 658 GCCCAA 653 >seq90427 Length=5563 Score = 95.1 bits (104), Expect = 2e-17 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CAG 76 |||||||| |||||| |||||| | | |||| ||| ||||| | | ||| || Sbjct 1323 TTAGATGCTTTCAGCAGTTATCCGCTTCGCACTTGGCTACCCAGTGTTTACCGTGGACAC 1382 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||||||| |||||||||| ||| ||||||||||||||||||| ||| || ||||| Sbjct 1383 GATAACTGGTACACCAGAGGTGCATCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTC 1442 Query 137 TCAAATTTCCTACGCCCACGAC 158 |||| || |||||||| || Sbjct 1443 TCAATGCTCTAACGCCCACAAC 1464 >seq63160 Length=1392 Score = 95.1 bits (104), Expect = 2e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||| | |||||||||| |||| ||| |||| |||||||||| | | | ||||||||| Sbjct 977 CGGACATGGACCGAACTATCTCAAGACATTCTAAACCCAGCTCACATATCGCTTTAATGG 1036 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 ||||||| ||||| |||| ||| |||| || || |||| | || |||| |||||| Sbjct 1037 GCGAACATCCCAATCCTT-GGAAATACTACAACCTCAGGTGGTGAAGAGCTGACATC 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779877244948