Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6995 215 2e-53 seq107061 212 2e-52 seq22357 96.9 1e-17 seq104164 84.2 7e-14 >seq6995 Length=4023 Score = 215 bits (238), Expect = 2e-53 Identities = 257/341 (75%), Gaps = 7/341 (2%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 |||| |||||||||||||| ||| || ||||||||||| || |||||||| | | | Sbjct 921 GTCTAATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGTGATGATCAGTATCTGGTTCG 862 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| ||||| ||| ||||||||||| ||| ||||||| |||||||||||| Sbjct 861 AGAGGATGATCAACCACACTGGGACTGAGACACGACCCAGACTCCTATGGGAGGCAGCAG 802 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| || | |||||| |||||||||| ||||| |||||||| || ||||| Sbjct 801 TGGGGAATTTTCCGCAATGGAAAAAAGCCTGACAGAGCAATGCCGCGTGGACGTAGAAGG 742 Query 343 CCTTCGGGTCGTAAAGCTC-TGTCCTCAAG--GAAGATAATGACGGTACTTGAGGAGGAA 399 | |||||| || || | |||| || |||| |||||| ||| || ||| || Sbjct 741 CTCATAGGTCGTGAACTTCTTTTCCTGGAGAAGAAG-CAATGACAGTATCTG-GGAATAA 684 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 | | |||||| ||||||||||||| ||||| | ||| || |||||||| |||| Sbjct 683 GTATCAACTAACTCTGTGCCAGCAGCCGTGGTAAGATAGAGGATGCAAGCGTTAT-CGGA 625 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | | | |||||||| | || ||||| || ||||||| Sbjct 624 ATGA-TTGAGCGTAAAGCTTCTGTGGGTGGCTTTTTAAGTC 585 >seq107061 Length=8882 Score = 212 bits (234), Expect = 2e-52 Identities = 238/312 (76%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| | ||||| ||| || |||||||||||||| |||||||||| | | |||| | Sbjct 8285 ATTATCAAGTTG---AGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGATG 8229 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGG--GAGGCAGCAGTGG 285 ||||| ||||| ||||||| |||||||||||| ||||||| || ||||||| ||||| Sbjct 8228 ATGATCAGCCAC--TGGAACTCAGACACGGTCCAGACTCCTATGGGAGAGGCAGTAGTGG 8171 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 ||||| || | |||||||| ||||||||| ||||| |||||||| | ||||| | Sbjct 8170 GGAATTTTTCGCAATGGGCGAAAGCCTGACTGAGCAATGCCGCGTGGTGGTAGAAGGTCC 8111 Query 346 TCGGGTCGTAAAGCTCTGTCCTCA-AGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 |||||||| || || | || | | |||| |||||||||| ||| |||| || | Sbjct 8110 ACGGGTCGTGAA-CTTTTCCCGGAGAAGAAG-CAATGACGGTATTTGGGGAGTAAACATT 8053 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||||| |||||||||| | ||||| || ||| || |||||||||| |||| | Sbjct 8052 GGCTAACTCTATGCCAGCAGCAGTGGTAAGACAGAGGATGCAAGCGTTATCCTGAATAAT 7993 Query 465 TGGGGCGTAAAG 476 |||| |||||| Sbjct 7992 TGGGCGGTAAAG 7981 >seq22357 Length=719 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | | Sbjct 441 GCGTCTGATTAGCTAGTTGGTGAGGCAAGAGCTTACCAAGGCGATGATCAGTAGCTGGTC 500 Query 221 TGAGAGGGTGATCGGCCACATTG 243 |||||| ||||| |||||| || Sbjct 501 CGAGAGGATGATCAGCCACACTG 523 >seq104164 Length=4651 Score = 84.2 bits (92), Expect = 7e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||| || ||| |||||||| | |||| ||||| | | Sbjct 2699 GCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTCACCAAGGCAATGATCGGTAGCTGGTC 2758 Query 221 TGAGAGGGTGATCGGCCACATTGGAA 246 |||||| ||||| ||||| ||||| Sbjct 2759 CGAGAGGATGATCAACCACACTGGAA 2784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495773032832