Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq6995 158 3e-36 seq79963 84.2 5e-14 seq100152 80.6 6e-13 seq59847 73.4 1e-10 seq37837 73.4 1e-10 >seq6995 Length=4023 Score = 158 bits (174), Expect = 3e-36 Identities = 232/327 (71%), Gaps = 1/327 (0%) Strand=Plus/Minus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| ||||||||||||| ||||| | ||| || ||||||||| ||||| | || Sbjct 676 CTAACTCTGTGCCAGCAGCCGTGGTAAGATAGAGGATGCAAGCGTTATC-GGAATGATTG 618 Query 82 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCC 141 |||||||| | || ||||| || ||||||| | || || | |||||||||| Sbjct 617 AGCGTAAAGCTTCTGTGGGTGGCTTTTTAAGTCTGCTGTCGAATCTCAGGGCTCAACCCT 558 Query 142 GGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGT 201 || | | |||||| | || |||| | | ||||| || |||||| || || Sbjct 557 GGACAATCGGTGGAAACTACCAATCTGGAGTACGGTAGGGGTAAAGGGAATTTCTGATGG 498 Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 || ||||||||||||||| || | |||||||| ||| || || || ||| | | Sbjct 497 AGTGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCAAAAGCACTCTGTTGGGCCG 438 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 | | ||| |||| ||||||| ||||||| || ||||||||||||| ||||||| Sbjct 437 AGAGTAACATTGAGAGACGAAAGCTGGGGGAGCGAATGGGATTAGATACCCCAGTAGTCC 378 Query 322 ACGCCGTAAACGATGAATACTAGGTGT 348 ||| |||| |||| |||| |||||| Sbjct 377 TAGCCATAAATGATGGATACCAGGTGT 351 >seq79963 Length=8051 Score = 84.2 bits (92), Expect = 5e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| ||||||| || |||||| ||||| Sbjct 5560 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTATATACC 5619 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 | ||||| | ||||||||||||| |||||||| Sbjct 5620 CCAGTAGTTCTAGCCGTAAACGATGGATACTAGG 5653 >seq100152 Length=11404 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| ||| |||| ||||||||||||||||||||||||| | | |||||||||||| Sbjct 3559 CGAAAGCATGGAGAGCGAACAGGATTAGATACCCTGGTAGTCTATGTCGTAAACGATGA 3617 >seq59847 Length=12058 Score = 73.4 bits (80), Expect = 1e-10 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 326 ||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 9017 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCC 8970 >seq37837 Length=7422 Score = 73.4 bits (80), Expect = 1e-10 Identities = 109/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| |||| | |||||||| || |||| | ||||| | | ||||| Sbjct 3442 AGTGGAATTTTGTGTGTGGGGGTGAAATCCGGAGATCCATGAAGGAATGCTAAAAGCGAA 3383 Query 245 GGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 || ||| || || | || | | ||| || ||||||| | || ||| |||||||| Sbjct 3382 GGTAGCTATCTCGGTCCCTACCA-ATGCTGGGGTGCGAAAGCATAGGAAGCGAACAGGAT 3324 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGAT 335 |||||||| ||||||||| | |||||||||| Sbjct 3323 TAGATACCTCGGTAGTCCATGTCGTAAACGAT 3292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201732180224