Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq81760 219 8e-55 seq66561 134 3e-29 seq107562 100 5e-19 seq96172 95.1 2e-17 seq111466 86.0 1e-14 >seq81760 Length=5622 Score = 219 bits (242), Expect = 8e-55 Identities = 209/264 (79%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| ||||||||||||||||| || | | || | | |||||||||||||||||| | Sbjct 3295 GCCAGCTTCTTAGAGGGACTA-CGACCTTTTAGGCTGCGTAAGTTTGAGGCAATAACATG 3237 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||| |||||||||||||||||||||| ||||| ||| | |||||||| Sbjct 3236 TCTGTGATTCCCTTAGATGTTCTGGGCCGCAA-----CTACATTGATGTATTCAACGAGT 3182 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | || || |||||||||| Sbjct 3181 TTATAGCCTTGGCCGATAGGGCCGGGTAATCTT-TGAAATTTCATCATGATGGGGATAGA 3123 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||| |||| ||| ||||||||||||||| ||||||||||||| ||||||||| | | Sbjct 3122 TTATTGTAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGTG 3063 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||| |||||||| || Sbjct 3062 CTGACTACGTCCTTGCCCTTTATA 3039 >seq66561 Length=1373 Score = 134 bits (148), Expect = 3e-29 Identities = 96/107 (90%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||| Sbjct 76 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 133 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 134 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGCGCTATACTGA 180 >seq107562 Length=8737 Score = 100 bits (110), Expect = 5e-19 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 76 TTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 ||||||||||| | || | |||| ||||| |||||||||||| |||||| ||||| Sbjct 3310 TTAGAGGGACTTCTGTCTTTTAGGCCGC-GGAAGATTGAGGCAATAATAGGTCTTTGATG 3252 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||| |||||||||||||||||||||| Sbjct 3251 CCCTTAGATGTTTAGGGCCGCACGCGCGCTACACTG 3216 >seq96172 Length=2600 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | ||||||||| |||| | | |||||||||| || ||||||||| ||||| Sbjct 164 GGGATTGGGGATTGCAATTGTTGCCCATGAACGAGGAATTCCCAGTAAGCGCAATTCATC 105 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||||||||||||||||||||| Sbjct 104 ATATTGCGTTGATTACGTCCCTGCCCTTTGTA 73 Score = 86.0 bits (94), Expect = 1e-14 Identities = 87/111 (78%), Gaps = 8/111 (7%) Strand=Plus/Minus Query 65 TCGCCGGC----TTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAAT 118 |||||||| |||||||||||| | ||| | ||||| ||| |||||||| Sbjct 441 TCGCCGGCGGACTTCTTAGAGGGATAAACGGTGTTTTAGCCGTAAGAAAC--GAGGCAAT 384 Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||||||||||| ||| ||||||||||| |||||| || Sbjct 383 AACAGGTCTGTGATGCCCTTAGATACTCTAGGCCGCACGCGTGCTACAATG 333 >seq111466 Length=2949 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 ||| |||| ||||||||||||| | ||||| | ||| || ||||||| | || || |||| Sbjct 1492 GAAATTTGTGGCAATAACAGGTTTATGATGTCTTTAAATATTCTGGGTCTCATGCACGCT 1551 Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 ||||||| | ||||||||| || || |||| | || ||||||||| || | ||| Sbjct 1552 ACACTGATGTATTCAACGAGTTTATAGCCGTGGCTGACAGACCTGGGTAAT-TTTTGAAA 1610 Query 224 CT 225 || Sbjct 1611 CT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946044482304