Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq81760 219 8e-55
seq66561 134 3e-29
seq107562 100 5e-19
seq96172 95.1 2e-17
seq111466 86.0 1e-14
>seq81760
Length=5622
Score = 219 bits (242), Expect = 8e-55
Identities = 209/264 (79%), Gaps = 9/264 (3%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| ||||||||||||||||| || | | || | | |||||||||||||||||| |
Sbjct 3295 GCCAGCTTCTTAGAGGGACTA-CGACCTTTTAGGCTGCGTAAGTTTGAGGCAATAACATG 3237
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
|||||||| |||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct 3236 TCTGTGATTCCCTTAGATGTTCTGGGCCGCAA-----CTACATTGATGTATTCAACGAGT 3182
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
| || ||||||||| ||| | |||||||||| | ||| | || || ||||||||||
Sbjct 3181 TTATAGCCTTGGCCGATAGGGCCGGGTAATCTT-TGAAATTTCATCATGATGGGGATAGA 3123
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||| |||| ||| ||||||||||||||| ||||||||||||| ||||||||| | |
Sbjct 3122 TTATTGTAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGTG 3063
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
||| ||||||| |||||||| ||
Sbjct 3062 CTGACTACGTCCTTGCCCTTTATA 3039
>seq66561
Length=1373
Score = 134 bits (148), Expect = 3e-29
Identities = 96/107 (90%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123
||| ||||||||||||||||| |||| | | |||| |||||||||||||||||||||
Sbjct 76 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 133
Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
|||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 134 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGCGCTATACTGA 180
>seq107562
Length=8737
Score = 100 bits (110), Expect = 5e-19
Identities = 81/96 (84%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 76 TTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133
||||||||||| | || | |||| ||||| |||||||||||| |||||| |||||
Sbjct 3310 TTAGAGGGACTTCTGTCTTTTAGGCCGC-GGAAGATTGAGGCAATAATAGGTCTTTGATG 3252
Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
|||||||||||| ||||||||||||||||||||||
Sbjct 3251 CCCTTAGATGTTTAGGGCCGCACGCGCGCTACACTG 3216
>seq96172
Length=2600
Score = 95.1 bits (104), Expect = 2e-17
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296
||||| | | ||||||||| |||| | | |||||||||| || ||||||||| |||||
Sbjct 164 GGGATTGGGGATTGCAATTGTTGCCCATGAACGAGGAATTCCCAGTAAGCGCAATTCATC 105
Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| |||||||||||||||||||||||||||
Sbjct 104 ATATTGCGTTGATTACGTCCCTGCCCTTTGTA 73
Score = 86.0 bits (94), Expect = 1e-14
Identities = 87/111 (78%), Gaps = 8/111 (7%)
Strand=Plus/Minus
Query 65 TCGCCGGC----TTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAAT 118
|||||||| |||||||||||| | ||| | ||||| ||| ||||||||
Sbjct 441 TCGCCGGCGGACTTCTTAGAGGGATAAACGGTGTTTTAGCCGTAAGAAAC--GAGGCAAT 384
Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
|||||||||||||||||||||||| ||| ||||||||||| |||||| ||
Sbjct 383 AACAGGTCTGTGATGCCCTTAGATACTCTAGGCCGCACGCGTGCTACAATG 333
>seq111466
Length=2949
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/122 (76%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163
||| |||| ||||||||||||| | ||||| | ||| || ||||||| | || || ||||
Sbjct 1492 GAAATTTGTGGCAATAACAGGTTTATGATGTCTTTAAATATTCTGGGTCTCATGCACGCT 1551
Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223
||||||| | ||||||||| || || |||| | || ||||||||| || | |||
Sbjct 1552 ACACTGATGTATTCAACGAGTTTATAGCCGTGGCTGACAGACCTGGGTAAT-TTTTGAAA 1610
Query 224 CT 225
||
Sbjct 1611 CT 1612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946044482304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |