Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq63161 107 6e-21 seq50997 105 2e-20 seq6994 100 1e-18 seq59433 91.5 5e-16 seq39541 77.0 1e-11 >seq63161 Length=6697 Score = 107 bits (118), Expect = 6e-21 Identities = 348/532 (65%), Gaps = 49/532 (9%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGG-ATGAAGGTGCGGTAACACGCCCTGGA 93 |||||||| | |||||||| ||||| ||||| |||||| | ||| | || |||| Sbjct 1233 GACCCGAACCAGGGTGATCTATCCATGACCAGGTATGAAGCTTGGGTGAAACTAAGTGGA 1174 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||| ||| || ||||| ||| | ||||||||||| | Sbjct 1173 GGTCCGAACTGACTGATGTTGAAGAATCAGCAAATGAGTTGTAGTTAGGGGTGAAATTCC 1114 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT--AGTGCCTCAAGTA 211 | | ||| || ||| |||||||| |||||| || |||| ||| ||| Sbjct 1113 ACTCGAACCCAGAGCTAGTTGGTTCTCCCCGAAATGCGTTGAGGTGCAGT------AGT- 1061 Query 212 TCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAA 265 | || |||| |||||| |||||||| ||| ||| | | ||| |||||| Sbjct 1060 TAACTGGACATCTAGGGGTAAAGCACTGTATTGGTGCGGGCCGCGAGAGCG--GTACCAA 1003 Query 266 ACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGC---------GGG----------- 305 | | |||||||| |||| | | | | ||| | ||| Sbjct 1002 ATCGAGGCAAACTCTGAATAC---TAGATATGACCACAAAATAATAGGGGTCAAGGTCGG 946 Query 306 --AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGC 363 ||||| || || | |||| | | | |||||||| || || ||| | | || | Sbjct 945 CTAGTGAAACGATAGGGGATAAGCTTCATTGCCGAGAGGGAAACAACCCGAATCACCATC 886 Query 364 TAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGG 423 ||||||||| |||||| ||| || | | || || || | ||| |||||| | | | Sbjct 885 TAAGGCCCCTAAATGATCGCTTTGTGATA--AAGGAGGTAGGGGTGCAAAGACAACCAAG 828 Query 424 ATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAG 483 ||||| | | ||||||| || | || |||||||| |||| |||||||| |||||| Sbjct 827 ATGTTCTCCTAGAAGCAGGCA-CCCTTGAAAGAGTGTGTAATAGCTCACTGGTCGAGCGC 769 Query 484 TCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 || ||| || || ||| ||| |||| ||| ||||||| ||||||| Sbjct 768 TCTTGCGCCGAAGATGAATGGGG--CTAAGCGATCTGCCGAAGCTGTGGGAT 719 >seq50997 Length=3988 Score = 105 bits (116), Expect = 2e-20 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | ||| |||| | |||||||| ||| | Sbjct 3398 CGAGTCTTCATAGGGCAATTGTCACTGCCTATGGACTCGAACCTGGGTGATCTATCCACG 3457 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 3458 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 3517 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | ||||||| ||||| ||||||||||| || | | ||| || ||| ||||||| Sbjct 3518 AACGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGTAGGTTCTCC 3577 Query 182 CCGAAAACTATTTAGG 197 | || | ||||||| Sbjct 3578 CTGAGATGCATTTAGG 3593 >seq6994 Length=7142 Score = 100 bits (110), Expect = 1e-18 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 3 GAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGG 62 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 4017 GAGTCCTCATAGGGCAATTGTCACTGCCTATGGACCCGAACCTGGGTGATCTATCCATGA 3958 Query 63 CCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTA 122 ||| ||||| | ||| | || | ||||| |||| ||| |||||||| ||||| Sbjct 3957 CCAAGATGACACTTGGGTGAAACTAAGTAGAGGTTCGAATTAACTCATGTTGAAGAATTA 3898 Query 123 GGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 | ||| || ||||| || |||||||| || | | ||| | || |||||||||||||| Sbjct 3897 GTAGATAAGTTGTGGATATGGGTGAAATGCCACTCGAACCTAGAGCTAGCTGGTTCTCTC 3838 Query 183 CGAAA 187 | ||| Sbjct 3837 CAAAA 3833 >seq59433 Length=7438 Score = 91.5 bits (100), Expect = 5e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||||||||||| ||| |||||||| |||||| ||||||| ||||| |||| |||||| Sbjct 6336 TGGAGGTCCGAACCGACTGATGTTGAAGAATTAGCGGATGAGTTGTGGTTAGGAGTGAAA 6395 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | | ||| | |||||||||||| |||||| Sbjct 6396 TGCCACTCGAACCCAAAGCTAGCTGGTTCTCCCCGAAA 6433 >seq39541 Length=2366 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 31 TGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCT 90 ||| ||||| || | |||||| | |||| ||||||||||| | ||| | || | Sbjct 1585 TGTGGACCCAAACCTGGGTGATCCATCCATTACCAGGATGAAGCTTGGGTGAAACTAGGT 1644 Query 91 GGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 ||||| ||||||| ||| |||||||| ||| || ||||||| ||||| || Sbjct 1645 GGAGGCCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGATA 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1687538806272