Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13665 468 2e-129 seq96170 401 2e-109 seq95606 132 2e-28 seq91803 123 8e-26 seq69828 95.1 4e-17 >seq13665 Length=2139 Score = 468 bits (518), Expect = 2e-129 Identities = 409/505 (81%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || |||||||||||||||||||| | | | || ||||||| |||||||| Sbjct 671 CTTCTGTTCCACAGGAGATTTCTGTTCTCCTTCAACTCATCTCAGGACACTTGCGTTATC 612 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||| | |||||||| ||||||| ||||| || || |||| Sbjct 611 TTTTAACAGATGTGCCGCCCCAACTAAACTCCCTACCTGACGATGTCTTCCACTTTGATC 552 Query 127 GGCCC-----GCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTT 180 | ||| | ||| ||||| ||| || | || | || || | ||| || Sbjct 551 GACCCATAGAGTCAAG--CCTTAGGTCCAAAAGAGGGGC----AATCCCCGCTTCTAATT 498 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCC 240 || | ||||||||| ||| | | ||||||||||||||||| | | ||||||| Sbjct 497 CACAAAATAAGTAAAATAACATTGAAAGTAGTGGTATTTCACTTTCATCTTT-CGGCTCC 439 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| ||| |||||| |||||||| ||||||| ||||||||||||||||||||||| Sbjct 438 CACTTATCCTAAACCTCTAAAGTCATTCTACAAAGTTGGACTAGAGTCAAGCTCAACAGG 379 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||| || | |||||||||| ||| ||||||||||||| ||| ||||| Sbjct 378 GTCTTCTTTCCCCGCTAATACGGCCAAGCCCGGTCCATTGGCTGTGGTTTTGCTGGATAG 319 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||| | ||||| |||||||||||||||||||||||||||| ||||||| |||| ||||| Sbjct 318 TAGACAAGGACAATGGGAATCTCGTTAATCCATTCATGCGCATCACTAACTAGAGGACGA 259 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 || |||| ||||||||||||||||||||||||||| |||| |||| |||||||||||| Sbjct 258 GGTATTTTGCTACCTTAAGAGAGTCATAGTTACTCTCGCCATTTATTTGCGCTTGGTTGA 199 Query 481 ATTTCTTCACTTTGACATTCAGAGC 505 ||||||||||||||||||| | ||| Sbjct 198 ATTTCTTCACTTTGACATTTAAAGC 174 >seq96170 Length=3516 Score = 401 bits (444), Expect = 2e-109 Identities = 312/371 (84%), Gaps = 13/371 (4%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--------CCG 230 || || || | |||||| ||||||| | |||| ||||||||||| || ||| Sbjct 1966 TTAATCGAGTCAGTAAAGAAACGATGAAAGTAGAGGTATTTCACTGTCGATTGAAGCCCG 2025 Query 231 AA-AC----GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 || || ||||| |||||||||||||||||| ||| ||||||| ||| || |||| Sbjct 2026 AAGACAACTATCTCCCTCTTATTCTACACCTCTCATGTCTCTTCACAATGTCAGATTAGA 2085 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2086 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGT 2145 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2146 GGTTTCGCTAGGTAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 2205 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2206 CTAATTAGATGACGAGGCATTTGGCTACCAGAAGAGAGTCATAGTTACTCCCGCCGTTTA 2265 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 | |||||| | || || | | ||||||| |||||||||||||||||||| Sbjct 2266 CTTGCGCTTAATATCATCTCAAATATATAACATTCAAAGCACTGGGCAGAAATCACAAGC 2325 Query 526 CGTCAACATCA 536 ||||||| || Sbjct 2326 TGTCAACACCA 2336 Score = 118 bits (130), Expect = 3e-24 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 1660 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGCTAACCTTAGGACACCTGCGTTATT 1719 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||| ||||||||| |||||||||| ||||||| |||| || Sbjct 1720 CTTTAACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCCTC 1769 >seq95606 Length=12831 Score = 132 bits (146), Expect = 2e-28 Identities = 93/106 (88%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| ||| | ||||||||||||||||||| Sbjct 8628 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAACTCATCTTAGGACACCTGCGTTATC 8687 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8688 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 8733 >seq91803 Length=7081 Score = 123 bits (136), Expect = 8e-26 Identities = 232/337 (69%), Gaps = 33/337 (10%) Strand=Plus/Minus Query 83 GCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGG---A 139 |||||| ||||| | ||||||||||||||| | | |||| || || | ||| | Sbjct 1733 GCCCCAACCAAATTTTCCACCTGACAATGTCTTTTGCTTGGATTGGTCCACTAAGACAAA 1674 Query 140 CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGC-TTCATTGATTAAGTaaaaaa 198 || || | | || || ||||| || | | | | |||| || ||||||||| | Sbjct 1673 CCATAGATCTAAGAAGAGG--GGTGATGATCGGCTTGGAATTCACAGAATAAGTAAAATA 1616 Query 199 aCGATAAGGGTAGTGGTATTTCACTT----------GCGCCGAAACGGCTCCCACTTATT 248 || ||| ||| |||||| |||||| || || || | ||||||| ||| Sbjct 1615 ACAGTAAAAGTATTGGTATCTCACTTTAACCTTTAGGCTCCCAACC---TCCCACTCATT 1559 Query 249 CTACACCTCTCA--------AGTCATTTCACAAAGTCGGACTA----GAGTCAAGCTCAA 296 || |||||||| || |||||||||||||| ||| | |||| |||||||| Sbjct 1558 ATAAACCTCTCAGACTCTCAAGCCATTTCACAAAGTCCGACAAGAATGAGTTAAGCTCAA 1499 Query 297 -CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||| |||||| | || ||||||||| |||| | | || ||||| ||||| ||| | | Sbjct 1498 TTAGGATCTTCTCTTCCAGCTGATTCCTCCAAACTCATTGCCTTGACTGTGATTT-GATG 1440 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||| |||| | | | | ||| ||||||||||||||| Sbjct 1439 GATACTAGACATGAATACTGGAAATCTCGTTAATCCA 1403 >seq69828 Length=4304 Score = 95.1 bits (104), Expect = 4e-17 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| | Sbjct 78 CTTAGGACACCTGCGTTATCTTTTAACACATATGCCGCCCCAGCCAAACACCCCACCTAA 19 Query 107 CAATGTC 113 ||||||| Sbjct 18 CAATGTC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633205170464