Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq19264 109 2e-21 seq63972 100 1e-18 seq50007 98.7 3e-18 seq23268 87.8 6e-15 seq63160 78.8 3e-12 >seq19264 Length=16172 Score = 109 bits (120), Expect = 2e-21 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 381 GTCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 440 Query 445 TGGTTATAGTTAC 457 ||||||||||| Sbjct 441 CCGTTATAGTTAC 453 >seq63972 Length=1708 Score = 100 bits (110), Expect = 1e-18 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||| | |||| |||||||| |||||||| |||||||||| ||||| Sbjct 469 TCGTTACGCCTTTCGTACGGGTCAGAACTTACTTGACAAGGA-TTTCGCTACCCTAGGAC 527 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||| |||| |||||||| || ||||||||| Sbjct 528 CGTTATAATTACGGCCGCCGTTCACCGGGGCTTCA 562 >seq50007 Length=6804 Score = 98.7 bits (108), Expect = 3e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| || |||| ||| ||||||||||||| |||||||||||||||||||||| Sbjct 3694 GTTACGCCTTTTGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACTA 3753 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||| ||| | ||||| ||||||||||| Sbjct 3754 TTATAATTATGGTCACCGTTCACTGGGGCTTC 3785 >seq23268 Length=4683 Score = 87.8 bits (96), Expect = 6e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4455 GTTACGCCTTTCGTGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 4510 >seq63160 Length=1392 Score = 78.8 bits (86), Expect = 3e-12 Identities = 99/135 (73%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || |||| | || Sbjct 1239 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAAGGCCAATCTCCGTCCAGCCCGA 1298 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| | |||||||||| |||| ||||| | | |||||| |||||| | Sbjct 1299 GGAAACCTTTGCACACCTCCGTTACCTTTTAGGAGGCCTA-TGCCCCATAGAAACTATCT 1357 Query 132 ACCAGGCACTGTCCC 146 ||| | |||||||| Sbjct 1358 ACCTGAGACTGTCCC 1372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700323191168