Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13045 273 7e-71 seq72672 208 2e-51 seq65443 179 1e-42 seq96172 147 7e-33 seq81760 145 2e-32 seq77677 80.6 8e-13 >seq13045 Length=2082 Score = 273 bits (302), Expect = 7e-71 Identities = 255/315 (81%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGT 258 ||||||||||||| |||||||||||||| |||||| ||| ||| |||| |||||| ||| Sbjct 866 AAAGTTGATAGGGTAGAAATTTGAATGATGCATCGCAGGCACAAAGGCCGTGCGATCCGT 807 Query 259 TAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGC----GTTGGTTTTTTATCTAAT 312 |||||| |||||||| | | ||| || || || || | ||||||||||| Sbjct 806 CGAGTTATCATGAATCATC--GTAGCAACGGGCAGAGCCAGTGTCGACCTTTTATCTAAT 749 Query 313 AAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 ||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||| || | Sbjct 748 AAATACATCCCTTCCAGAAGTTGGGGTTTGGTGCATGTATTAGCTCTAGAATTACTACAG 689 Query 372 TTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 |||||| |||| ||| ||| |||||| |||| ||||||||||||||||||||||||||| Sbjct 688 TTATCCGAGTAGCAAG-TACCATCAAACAAACAATAACTGATTTAATGAGCCATTCGCAG 630 Query 432 TTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAA-TCTTTGAGACAAGCA 489 ||| || || | ||| | | || ||| ||||||||||||||| | ||| ||||||||| Sbjct 629 TTTTACAGTCTGAATTAGTTCGTATTTATACATGCATGGCTTAATTTTTTTAGACAAGCA 570 Query 490 TATGACTACTGGCAG 504 ||||| |||||||| Sbjct 569 CATGACGACTGGCAG 555 >seq72672 Length=1184 Score = 208 bits (230), Expect = 2e-51 Identities = 165/194 (85%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || | ||||| ||||||||||||| ||| ||||||||||||| Sbjct 193 TTTTATCTAATAAATGCATCACTTCCAGAAGTCGGGGTTTGGTGCAGGTATTAGCTCTAG 134 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||||| ||||||||| |||| ||| ||| |||||| |||| |||||||||||||||| Sbjct 133 AATTATTACGGTTATCTGAGTAGCAAG-TACCATCAAACAAACTATAACTGATTTAATGA 75 Query 421 GCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTT 479 | ||||||||||||||| || | ||| | | | | ||| |||||||||||||||||||| Sbjct 74 GTCATTCGCAGTTTCACAGTCTGAATTAGTTCACAGTTACACATGCATGGCTTAATCTTT 15 Query 480 GAGACAAGCATATG 493 |||||||||||||| Sbjct 14 GAGACAAGCATATG 1 >seq65443 Length=5363 Score = 179 bits (198), Expect = 1e-42 Identities = 122/137 (89%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 |||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||| Sbjct 3663 TTTATTGTCACTACCTCCCCATGTCAAGATTGGGTAATTTGCACGCTTGCTGCCTTCCTT 3604 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||| ||| Sbjct 3603 GGATGTGGTAGCCATTTCTCAGGCTCCCTCTCTGGAATCGAACCCTAGTTCTCCGTCACC 3544 Query 165 CGTTGATACCATGGTAG 181 ||| ||||| |||| Sbjct 3543 CGTCACCACCATAGTAG 3527 Score = 102 bits (112), Expect = 2e-19 Identities = 87/106 (82%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 27 AAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGC 86 || ||||| |||| |||||||| |||||||| |||| |||| ||||| ||||||| Sbjct 965 AACAGCCCAGTATTGTTATTTATTCTCACTACCACCCCATGTCAAGATTGAGTAATTTT- 907 Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 | | ||||| ||||||||||||||||||||| |||||||| || || Sbjct 906 GTGTCTGCTACCTTCCTTGGATGTGGTAGCCATTTCTCAGACTACC 861 Score = 93.3 bits (102), Expect = 1e-16 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| ||||||| ||| || |||||| | | |||||||| ||||||| | Sbjct 753 GTACTCATTTCAATTACTAGAATTTAA-GAGCCCGATTTTGTTATTTATTATCACTACAT 811 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 | ||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 812 CTA-GTGTCAAGATTGGGTAATTTGCGCATCTATTGCCTTCCTTGGATGTGGTAG 865 >seq96172 Length=2600 Score = 147 bits (162), Expect = 7e-33 Identities = 137/168 (82%), Gaps = 11/168 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATA 400 |||||||||||||||||||||||||| ||||||||| || || | || ||||| || Sbjct 2114 GCATGTATTAGCTCTAGAATTACCACAGTTATCCATATA--AACTTTAAACAATCAAGTA 2171 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTG---CTTATACT 456 | || |||||||||||||||||||||| ||||| | | ||| || | ||| ||| Sbjct 2172 GATTATGACTGATTTAATGAGCCATTCGCGGTTTCGCCCTCATA-ATCGGAGCTTGAACT 2230 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 2231 TT-ACATGCATGGCTTAATCTTCGAGACAAGCATACGACTACTGGCAG 2277 Score = 136 bits (150), Expect = 1e-29 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||| |||| || |||||||||||| |||| | | ||||||||||||||||| Sbjct 1781 ATTGTGTAAGTTTCGCGCCTGCTGCAGACCTTAGTCCTACTAGCCGTTTCTCAGGCTTGT 1840 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| |||| |||||| |||||||||||||| |||||||||||| | || ||| Sbjct 1841 TCTCCGGAGTCGAGCCCTAACTCCCCGTTACCCGTCACCACCATGGTAGGCAATTACCCT 1900 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||| | ||||||||| ||||| | | || ||| Sbjct 1901 ACCATCCACAGTTGATAGAGCAGACACTCGATTGA 1935 >seq81760 Length=5622 Score = 145 bits (160), Expect = 2e-32 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 || ||||||||||||| ||||||||| ||||||||||||| | || | ||| ||||| Sbjct 3635 CTACTGCCTTCCTTGGTCGTGGTAGCCATTTCTCAGGCTCCTTTTCTGAAATTGAACCTC 3694 Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210 ||||| | || |||| | ||||| |||||| |||||||||||||||||||||||||| Sbjct 3695 AATTCTCTGTCACCCATCACCACCATAGTAGGCTACTATCCTACCATCGAAAGTTGATAG 3754 Query 211 GGCAGAAATTTGAATGAACC 230 | || |||||||||||| || Sbjct 3755 GACAAAAATTTGAATGATCC 3774 >seq77677 Length=3899 Score = 80.6 bits (88), Expect = 8e-13 Identities = 71/88 (81%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| || | |||||||||||| |||||||||||||||| ||||||||| || Sbjct 1109 GTGTCAGGGTCGGGTAATTTGCGGGCCTGCTGCCTTCCTTAGATGTGGTA---ATTGAGA 1053 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAA 152 ||||||||||| |||||| |||| ||| Sbjct 1052 TGGCTCCCTCTCTGGAATCAAACCGTAA 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508557417728