Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq31467 174 2e-38 seq99465 165 9e-36 seq115592 145 8e-30 seq85463 123 3e-23 seq110764 100 3e-16 seq96029 93.3 5e-14 seq42107 86.0 7e-12 >seq31467 Length=18065 Score = 174 bits (192), Expect = 2e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 160354 CGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTAC 160413 ||| || ||||| |||||||| || || || ||| |||||||||||| || |||| || Sbjct 5479 CGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 5420 Query 160414 TTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGG 160473 ||||||| | || | || || ||||||| ||| || || | ||||||| | ||| Sbjct 5419 TTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGG 5360 Query 160474 TCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTT 160533 |||||||||||| ||||| || ||||| || || ||||| ||||| | || |||||||| Sbjct 5359 TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTT 5300 Query 160534 CCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTG 160587 ||||||||| || |||||||| || || | |||||||| || |||||||| Sbjct 5299 CCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 165 bits (182), Expect = 9e-36 Identities = 224/311 (72%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||| ||| | |||||| | ||||| || ||| || |||| |||||||| || || Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||| ||||||| |||| ||| |||||||| | || || || ||||| ||||||||| | Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCATTC 3064 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 | ||| || || || || ||||||| || || || ||| |||||||||||| Sbjct 3065 AT-----ATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| ||||||||| | |||| | || ||||||| ||| | || | || Sbjct 3120 TTCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGG 3179 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||||| || | |||| |||| || ||||| || ||| |||| ||||| || Sbjct 3180 TTACAAATTCGGTC-AGGGAAAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGG 3238 Query 160522 TCGTTTGATCT 160532 || ||||||| Sbjct 3239 CCGATTGATCT 3249 >seq115592 Length=218 Score = 145 bits (160), Expect = 8e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 162073 GTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAAC 162132 || || ||| | ||||| | ||||||||| | |||||||| |||| || || ||||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 162133 ACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAG 162192 || | | |||||||||| |||||||| ||| |||||| || | || |||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 162193 GAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCT 162252 || || ||||| || ||||| ||||| ||||| || ||||| || ||||| || ||||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 162253 TTTAGTAATAAGCGTTGGTTGCATTTCTTTATG 162285 ||| ||||| |||||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 123 bits (136), Expect = 3e-23 Identities = 199/287 (69%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 160508 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTG 160567 ||||| ||||| || || ||||||||||||||||| || ||||||| || || | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 160568 CACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCT 160627 |||||| |||| |||||||||||||| || || || |||||||||| || ||| | Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 160628 ACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGA 160687 |||||| |||||||| ||||||||||| || ||| | ||| | | || | ||| | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 160688 CAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATG 160747 || || | |||| || | | ||||| ||| || || || ||||| ||| Sbjct 4198 CA-------AAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 160748 CACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 | | ||||| || | | |||| ||||| ||||||| ||| Sbjct 4251 C---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq110764 Length=2751 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 160568 CACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCT 160627 ||||||||||| |||||||||||||| || || |||||||||||||| | ||| | Sbjct 1549 CACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAAC 1608 Query 160628 ACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCA 160665 |||||||| ||||| || || |||||||| |||||||| Sbjct 1609 ACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq96029 Length=8464 Score = 93.3 bits (102), Expect = 5e-14 Identities = 210/308 (68%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 161557 TTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGG 161616 |||| |||||| |||| || | || ||| | ||| ||| ||||||| || |||||| Sbjct 1615 TTTGGAGGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGG 1673 Query 161617 CTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTT 161676 | | || || ||||| | || |||||||||||| | | || ||||||||| | Sbjct 1674 TTCGCAGGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTG 1733 Query 161677 G-AGGGTGCAAATTTTCTT-ACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATT 161734 | ||| || || |||||| ||| | |||||| | || ||| | | | | |||| Sbjct 1734 GAAGGCTGTAA--TTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATT 1791 Query 161735 CTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTT 161793 || || || || || ||| ||||||| | ||||| ||||| | ||| ||| | Sbjct 1792 CT-TTATTGTTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTG 1850 Query 161794 GGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTT 161853 ||||| || |||| ||| || || || || || |||||| || || || |||||| | Sbjct 1851 GGGGGTCTGTGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATGTTA 1910 Query 161854 CGTCAGTT 161861 | ||| || Sbjct 1911 CATCAATT 1918 >seq42107 Length=2384 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||| |||||||||||||||| || || |||| | |||||||| || ||||| |||| Sbjct 1371 TATGTGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTT 1430 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCC 160239 ||||| || ||||| || || |||| | | ||||| ||| | ||||||| Sbjct 1431 GCATATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550535199845400