Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq85463 143 3e-29 seq115592 132 6e-26 seq31467 123 3e-23 seq110764 102 1e-16 seq99465 84.2 3e-11 >seq85463 Length=6098 Score = 143 bits (158), Expect = 3e-29 Identities = 179/245 (73%), Gaps = 9/245 (4%) Strand=Plus/Plus Query 189555 TCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACT 189614 |||||| || || || || | |||||||||||||| ||| ||||||| ||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 189615 TCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAG 189674 |||||| |||| ||||| ||||| || |||||||| ||||| || | || || |||| Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 189675 CACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGG 189734 | |||||| ||||| || ||||| ||||| || || ||||| | ||||| ||||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 189735 TCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCAT 189794 || || | |||| || | ||||||||||| |||||||| ||||| || Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 189795 GCATG 189799 ||||| Sbjct 4250 GCATG 4254 >seq115592 Length=218 Score = 132 bits (146), Expect = 6e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 190545 GTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAAT 190604 ||||| ||| | |||| | || | || | || || ||||||| || ||||| ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 190605 ACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAG 190664 ||||| | |||||||||||| ||||| || || || || || | || |||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 190665 GAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCG 190724 ||||| || ||||| ||||||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 190725 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATG 190757 || ||||| | ||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq31467 Length=18065 Score = 123 bits (136), Expect = 3e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 189399 GCTG-GGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCG 189457 |||| || || || ||||| ||||| || || || ||| || ||||||||||| | | Sbjct 5483 GCTGCGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 5424 Query 189458 TTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGT 189517 | || ||| || | | |||||||| |||| || || || | ||||||| | Sbjct 5423 TAACTTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 5364 Query 189518 TTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTA 189577 || ||||| |||||||| || || ||||| || |||||||| || || | || | | Sbjct 5363 CCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGA 5304 Query 189578 TCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTG 189635 ||||||||||||| ||||||||||| ||||| | |||||||| || ||||| || Sbjct 5303 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq110764 Length=2751 Score = 102 bits (112), Expect = 1e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 189607 CGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTC 189666 ||||| | ||||||||||| ||||| ||||| || |||||||||||||| || || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 189667 GGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAAT 189715 || ||| ||||||||| |||||||| || || ||||| ||||| |||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 >seq99465 Length=4513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 189290 TTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACA 189349 |||||||||| ||| ||||| | ||||| || || | | || ||||||| || Sbjct 2965 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCA 3024 Query 189350 TGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCG 189409 || |||| ||| | || ||||| || || || ||||| | || ||| || || | Sbjct 3025 TGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAG 3079 Query 189410 CAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCAC 189469 | ||||| |||| || || || ||| || ||||||||||| | || || ||| Sbjct 3080 CGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 3139 Query 189470 TGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAG 189529 || | | ||||||| |||| || | || | |||||||| || || || | | Sbjct 3140 TGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA- 3198 Query 189530 AAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCT 189580 ||||| | || || ||||| ||||| |||| || || || || | |||| Sbjct 3199 AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633113083482000