Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq115592 179 4e-40 seq85463 170 2e-37 seq31467 154 2e-32 seq99465 143 3e-29 seq71831 141 1e-28 seq110764 122 1e-22 seq46960 98.7 1e-15 seq100051 86.0 7e-12 >seq115592 Length=218 Score = 179 bits (198), Expect = 4e-40 Identities = 161/201 (80%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 164458 TTGGTGG-TGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAA 164516 |||| || |||| | || || ||||||||||||||||||||||| |||||||| |||||| Sbjct 204 TTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAA 145 Query 164517 GATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTAC 164576 |||||||| ||||||| ||| || || | || ||||||| ||||| ||||| Sbjct 144 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 85 Query 164577 TCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAG 164636 || ||||||||||| |||||||| ||||| || || ||||| ||||||| |||||| Sbjct 84 TCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 25 Query 164637 CGTTGGTTGCACTTCTTTATG 164657 |||||||| || ||||||||| Sbjct 24 CGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 170 bits (188), Expect = 2e-37 Identities = 211/288 (73%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 161276 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTT 161335 |||||||||||| || || ||||||||||||| ||| ||| ||||||| |||||||| Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 161336 GCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTC 161395 |||||| |||| || || |||||||| || ||||| |||||||||| || ||| || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 161396 CACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGG 161455 | |||||| ||||| || || || ||||| || ||| | ||| | | ||| || Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGT----- 4191 Query 161456 CAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAAT 161515 ||||||| || | |||| ||| | | || ||||||||||||||||| ||||| || Sbjct 4192 CAAAGTC--AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 161516 GCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 || ||||||| || | | |||| || || ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 161124 GGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACT 161183 || || |||||||| ||||| || || || ||| || ||||||||||| |||| ||| Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 161184 TCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGT 161243 ||| || | | |||||||| || || || || || | ||||||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 161244 CAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTC 161303 ||||| ||||| || || || ||||| || |||||||||||||| | || |||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 161304 CAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATG 161356 ||||| ||| ||||||||||| |||||||| |||||||| || || || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 143 bits (158), Expect = 3e-29 Identities = 206/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| ||| |||||||||||||| | || || ||| |||| |||||||||||| Sbjct 2967 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATG 3026 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| ||| |||| || || || || || ||||| | || |||| || || || Sbjct 3027 ATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCG 3081 Query 161133 GGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTG 161192 ||||| |||| || || || ||| || ||||||||||| |||| |||||| || Sbjct 3082 GGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3141 Query 161193 GTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAA 161252 | | ||||||| || || || | || | |||||||| || ||||| | | || Sbjct 3142 ATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AA 3200 Query 161253 GAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCT 161301 || | || || ||||| ||||| |||||||||| || || |||||| Sbjct 3201 GAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq71831 Length=3823 Score = 141 bits (156), Expect = 1e-28 Identities = 205/288 (71%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| ||| | |||||||||||| || || || ||| |||| |||||||||||| Sbjct 956 GGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTCTTGTACTTTCAACTTCATG 897 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| || |||| || |||| ||| || ||| |||| || || ||||| | || ||| Sbjct 896 ATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCATTTCATATGTTAAGCGTAGCT 838 Query 161133 GGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTG 161192 |||| | || || || || ||| | ||||||||||| ||| |||||| || Sbjct 837 AGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGCAACTTCTAGTTTG 778 Query 161193 GTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAA 161252 | | ||||||| || || || || || | || |||| ||| ||||||| || Sbjct 777 ATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATACAGATTTAGTCAAGAGAAA 718 Query 161253 GAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 161300 || || || || |||| | |||||||||||||| || || ||||| Sbjct 717 GAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCGATTGATC 670 >seq110764 Length=2751 Score = 122 bits (134), Expect = 1e-22 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 161328 CGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTT 161387 |||||||| ||||||||||| || || |||||||| || ||||||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 161388 GGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCA 161434 ||| || ||||||||| |||||||| ||||| ||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq46960 Length=374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 |||| ||||||| | | ||||||||||| |||||||||| || ||| | |||| | Sbjct 4 AATCATCTTTACATTAGATGGTTCGGTGTTTTGATGATCCCTACCTCATTGACCGCAA-C 62 Query 160659 GTCTG-CTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| | | ||| |||||||||| || || || || || ||||| ||||| Sbjct 63 TTCTGTATTTATTATTACCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 122 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACAT 160753 || ||| |||| | || | ||||| |||||||| Sbjct 123 ACTTGTTTCTGGATATCTACTTTATGGGAACAACAT 158 >seq100051 Length=9184 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 161296 TGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCAT 161355 |||||||| |||| ||| |||||||| || |||||||| ||||||||||| | || | Sbjct 2492 TGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCTT 2433 Query 161356 GGCCTGTTGTCGGTATCTGGTTCAC 161380 ||||||| | |||||||||||||| Sbjct 2432 GGCCTGTAATGGGTATCTGGTTCAC 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558475073741200