Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq12 226 7e-57 seq5 179 1e-42 seq18 154 4e-35 >seq12 Length=13301 Score = 226 bits (250), Expect = 7e-57 Identities = 296/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 9064 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 9005 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 9004 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 8945 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 8944 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 8885 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 8884 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 8825 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 8824 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 8765 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 8764 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 8705 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 8704 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 8656 >seq5 Length=20976 Score = 179 bits (198), Expect = 1e-42 Identities = 242/334 (72%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 3878 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 3819 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 3818 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 3762 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 3761 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 3705 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| | |||| | | |||||| |||| || Sbjct 3704 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCCGAGATCTACGAAGGAACGCCAAAAGC 3645 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| || || Sbjct 3644 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAATGGG 3585 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||| |||||||| ||| |||||||| Sbjct 3584 ATTAGATACCCCAGTAGTCCATGCCGTAAACGAT 3551 >seq18 Length=10101 Score = 154 bits (170), Expect = 4e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| |||| |||| ||||||||||||||||||| || ||| ||| Sbjct 286 TATCTGGGGAATAAGCATCGGCGAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 227 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 226 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 167 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 166 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 107 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| | ||||||||||| || | | ||||||||| || Sbjct 106 GGCAGAGGGAATTTCCGGTGGAGCGGAAAAATGCGTAGAGATCGGAAAGAACACCAAGGG 47 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGC 287 |||| ||| | ||||| |||||||| || | |||||||| Sbjct 46 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289512810144