Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq12 226 6e-57 seq18 208 2e-51 seq5 197 3e-48 >seq12 Length=13301 Score = 226 bits (250), Expect = 6e-57 Identities = 239/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 9121 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 9179 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 9180 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 9239 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 9240 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCT 9299 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | || | || ||| | || || || || | || | ||||||||| Sbjct 9300 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 9346 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 9347 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 9404 Query 327 TCCGCCGCT 335 |||||| || Sbjct 9405 TCCGCCACT 9413 >seq18 Length=10101 Score = 208 bits (230), Expect = 2e-51 Identities = 149/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||| |||||||| || |||||||||||||||||| Sbjct 343 CACGCGGCATTG-CTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 401 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||| | Sbjct 402 CCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 461 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 462 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 511 >seq5 Length=20976 Score = 197 bits (218), Expect = 3e-48 Identities = 178/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATC--CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | || | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 3913 CTTTACAAGCGGCGGTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 3970 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| |||| |||||| || |||||||||||| || Sbjct 3971 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCC 4030 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||| ||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 4031 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 4090 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 4091 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 4130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071927522080