Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq12 215 1e-53 seq18 174 3e-41 seq5 127 4e-27 seq2 73.4 8e-11 >seq12 Length=13301 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 9126 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 9185 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 9186 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 9245 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||| ||||| || | Sbjct 9246 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 9305 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 9306 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 9349 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 9350 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 9408 Query 300 CCACT 304 ||||| Sbjct 9409 CCACT 9413 >seq18 Length=10101 Score = 174 bits (192), Expect = 3e-41 Identities = 141/171 (82%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| ||||||| | || || ||||||||||||||||||||| Sbjct 348 GGCATTGCTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 407 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||| ||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 408 GAGTCTGGGCCGTATCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 467 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCC 171 | ||| |||||| |||||| ||||||||||| |||||| | ||| |||| Sbjct 468 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCC 518 >seq5 Length=20976 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| |||| |||||| Sbjct 3953 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCC 4012 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | || || || || |||| ||| | || Sbjct 4013 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGG 4072 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 4073 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 4105 >seq2 Length=32909 Score = 73.4 bits (80), Expect = 8e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 228 GGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTA 287 ||||||||| |||||||| ||| |||| ||| || |||||||| || ||| |||| Sbjct 18144 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTA 18202 Query 288 CTCACCCGTCCGCCACT 304 ||||||||||||||||| Sbjct 18203 CTCACCCGTCCGCCACT 18219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998332498176