Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq229 491 1e-136 seq3103 237 5e-60 seq69 206 9e-51 seq3667 105 2e-20 seq22 75.2 4e-11 >seq229 Length=1646 Score = 491 bits (544), Expect = 1e-136 Identities = 360/414 (87%), Gaps = 7/414 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1236 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1295 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1296 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1355 Query 127 GGCCCGCGAAGGA---CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||||| ||| |||| ||| ||| | || | ||| || |||| |||| Sbjct 1356 GGCCCGCCGAGGCGAGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 1413 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| |||| ||||||||| Sbjct 1414 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTT-CGGCTCCCA 1472 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 1532 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1533 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 1592 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1593 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 1646 >seq3103 Length=508 Score = 237 bits (262), Expect = 5e-60 Identities = 144/151 (95%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT-GGCTGTGGTT 349 |||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||| Sbjct 230 GCTCAACAGGGTCTTCTTTCCCCGATGATTCTGCCAAGCCCGTTCCCTTCGGTTGTGGTT 171 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 170 TCGCTGGATAGTAGACAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAA 111 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGA 440 ||||||||||||||||||||||||||||||| Sbjct 110 TTAGATGACGAGGCATTTGGCTACCTTAAGA 80 >seq69 Length=3445 Score = 206 bits (228), Expect = 9e-51 Identities = 117/119 (98%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 60 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 61 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 119 >seq3667 Length=454 Score = 105 bits (116), Expect = 2e-20 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 ATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 395 Query 417 A 417 | Sbjct 394 A 394 >seq22 Length=7627 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 3719 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 3778 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||| || ||| | ||||||| |||||||||||| Sbjct 3779 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACC 3817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635089444128