Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq12 125 2e-26 seq18 113 1e-22 seq5 111 3e-22 >seq12 Length=13301 Score = 125 bits (138), Expect = 2e-26 Identities = 204/295 (69%), Gaps = 18/295 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 9024 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 9072 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 9073 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 9125 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 9126 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 9185 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 9186 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 9245 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | | || ||| || || || | || |||| ||||| ||||| ||| || Sbjct 9246 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 9300 >seq18 Length=10101 Score = 113 bits (124), Expect = 1e-22 Identities = 150/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 309 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 367 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||||||||||||||||||||| ||| |||| |||||| Sbjct 368 TTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAG 427 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 428 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 487 Query 261 ACCCCGCCTACTACCTAATGGAACGCA 287 || | || |||| ||||| ||||| Sbjct 488 GCCTCACCAACTAGCTAATCAGACGCA 514 >seq5 Length=20976 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 3931 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3990 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| |||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 3991 CTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAA 4050 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 4051 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 4110 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 4111 GCAGGCTCATCAAACAGCG 4129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068727738432