Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20centranthifolius_20[genbank_20GCA_5F000737435.1_202014- 08-04] 6,761 sequences; 4,471,593 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq131 728 0.0 seq5 659 0.0 seq21 518 4e-142 >seq131 Length=2205 Score = 728 bits (806), Expect = 0.0 Identities = 761/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| ||| | || ||||||||| |||| ||||| ||||| || Sbjct 1330 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1271 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| ||| ||| |||| ||||| Sbjct 1270 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 1212 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| |||||||| ||| |||| || || | || |||||||| Sbjct 1211 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1152 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||| ||||| || ||||| |||| || || ||| | ||||| || || || Sbjct 1151 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 1092 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 ||||||||| ||||| ||||||||||| | ||||||||||||||||| |||| | || Sbjct 1091 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 1032 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || ||||||||||| |||||||| ||| | ||| Sbjct 1031 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 972 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | | Sbjct 971 TCTGGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 913 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | |||| || | |||||||| ||| |||||||||||||| || || | Sbjct 912 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 853 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 | |||||||| |||||||||||| |||| |||||||| || ||||||||||| ||||| | Sbjct 852 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 793 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| || || |||||||| ||||| ||||| || ||| || ||||||| Sbjct 792 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 733 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| |||||| || | | |||||||| || || || || || | | Sbjct 732 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 673 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| || |||||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 672 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 613 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || ||||||||||||| ||| ||||||||||| |||||||| ||||||||||| | Sbjct 612 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 553 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || |||||||| || ||||||||||||||||| | ||| || || |||||||||| Sbjct 552 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGTACTATGGCATTCA 493 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 |||| || || ||||| || ||||| || | | ||| | || ||| || | || | Sbjct 492 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 433 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| || | || ||||||||||| ||||||||||| ||||| || ||||||| Sbjct 432 CTTGGGCTGATATTATCAACCGTGCTAACCTGGGTATGGAAGTTATGCATGAACGTAATG 373 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 |||| ||||||||||| ||||| ||||||| ||| Sbjct 372 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 339 >seq5 Length=20976 Score = 659 bits (730), Expect = 0.0 Identities = 699/914 (76%), Gaps = 8/914 (1%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 501 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 560 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 || | ||||||| ||| ||| |||||||||| || || || || || ||||| ||||| Sbjct 561 -TCGGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 619 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | || |||||||| || |||| ||||| || ||||| | Sbjct 620 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTCTCTCAGGTGCCATTATTCCTAC 679 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | ||||| ||||| || |||||||| ||||| |||||||||| Sbjct 680 TTCTGCAGCTATCGGTTTGCACTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAATG 739 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCAT--CTTC 160895 | | ||||| ||||||||||| |||| | || | |||||| | | || | |||| Sbjct 740 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTC 799 Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 | ||||||||||| |||||||||||| | ||| || || ||||| || ||||| ||| Sbjct 800 T--TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGAT-TGC 856 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || |||||||| ||||| | || || ||| | |||| || |||| Sbjct 857 TGTTGCATATTCCGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGG 916 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCT 161074 |||||| ||| |||||||||||||| || || || | |||||| |||||||||||| | Sbjct 917 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTATGGTACTTTCAACTTCATGAT 976 Query 161075 TGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGG 161134 ||| |||||||| || ||||||||||| |||||||| || |||||||| || || ||||| Sbjct 977 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 1036 Query 161135 TGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGT 161194 ||| ||||| || || || ||| || ||||||||||| |||| |||||| || | Sbjct 1037 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 1096 Query 161195 TCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 161254 | |||||||| || || || || || | ||||| | || |||||||| ||||| Sbjct 1097 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAGAGATTCGGTCAAGAGGAAGA 1156 Query 161255 GACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 161314 || || || ||||| || ||||||||||| || || || ||||||||||||| ||| Sbjct 1157 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 1216 Query 161315 CTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 161374 ||||||||||| |||||||| ||||||||||| || || |||||||| || |||||||| Sbjct 1217 TTTCAACAACTCTCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTG 1276 Query 161375 GTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCA 161434 ||||||||| | ||| || ||| |||||||||||||| || || ||||| |||||||| Sbjct 1277 GTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGCTTCAATTTCAACCA 1336 Query 161435 GTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGC 161494 || | | ||| |||| ||| || | || || |||||||| | | || ||||| Sbjct 1337 ATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAACCGTGC 1396 Query 161495 TAACCTTGGTATGG 161508 |||||||||||||| Sbjct 1397 TAACCTTGGTATGG 1410 >seq21 Length=7990 Score = 518 bits (574), Expect = 4e-142 Identities = 712/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| |||||||| || || | || ||||| ||| ||| | || Sbjct 1074 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 1133 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| ||||| || | || Sbjct 1134 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 1193 Query 164037 TCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 |||| | ||| ||| || ||||||| | ||||| || || || || |||||| | Sbjct 1194 ---AGTTCCTATTTGGAAGGCTG-TAATTTCTTAACAGCCGCAGTTTCTACTCCTGCTAA 1249 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 1250 TAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG 1309 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || || ||| ||||||| || | || || |||| | || || Sbjct 1310 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAAT 1369 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||||||| | || || ||||| |||| || ||| | || || || ||||| Sbjct 1370 AGGTTTCATGTTACGTCAATTTGAGCTTGCCCGATCTGTTCAATTGCGACCTTATAATGC 1429 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332 || || |||||||| || |||||||| ||||| || ||||| || || || || || Sbjct 1430 AATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 1489 Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392 ||| ||| ||||||||||||| || ||||| || || || || || |||||| || | Sbjct 1490 GCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCT 1549 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || | ||||| || ||||| ||||| || ||||| || ||||||||||| ||||| || Sbjct 1550 CTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGG 1609 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | | || | |||| | || || ||||||||||||||||| ||||| |||||||| || Sbjct 1610 TGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 1669 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| ||||||| || || || | || ||||||| |||||| || Sbjct 1670 TGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAAC 1729 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 || || ||||||||||| |||||||| ||||| || || ||||| ||||||| ||| Sbjct 1730 CTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 1789 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 1790 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 1849 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | ||||| | || || || || ||||| || || || || |||||||| || Sbjct 1850 TCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAAT 1909 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | | ||||| || ||||||||||||||||| ||||| || || || || || | || || Sbjct 1910 TCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGA 1969 Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872 ||| | || || |||||||| | ||| ||||| || ||| || |||| || || Sbjct 1970 AGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 2029 Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||||| || | || ||||| || ||| Sbjct 2030 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559280729792400