Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq34 226 6e-57 seq2811 208 2e-51 seq92 197 3e-48 >seq34 Length=4260 Score = 226 bits (250), Expect = 6e-57 Identities = 239/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 80 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 138 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 139 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 198 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 199 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCT 258 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | || | || ||| | || || || || | || | ||||||||| Sbjct 259 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 305 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 306 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 363 Query 327 TCCGCCGCT 335 |||||| || Sbjct 364 TCCGCCACT 372 >seq2811 Length=482 Score = 208 bits (230), Expect = 2e-51 Identities = 149/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||| |||||||| || |||||||||||||||||| Sbjct 403 CACGCGGCATTG-CTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 345 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||| | Sbjct 344 CCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 285 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 284 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 235 >seq92 Length=2672 Score = 197 bits (218), Expect = 3e-48 Identities = 178/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATC--CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | || | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 1638 CTTTACAAGCGGCGGTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 1581 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| |||| |||||| || |||||||||||| || Sbjct 1580 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCC 1521 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||| ||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 1520 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 1461 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 1460 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071940793440