Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2 661 0.0 seq1 567 8e-157 >seq2 Length=21306 Score = 661 bits (732), Expect = 0.0 Identities = 744/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || | |||||||| || ||||| Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||| ||||| || |||| |||| || || ||| | ||||| ||||| || Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || || ||| | || || |||||||||| |||| | || Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | || ||||||||||||||||| || || ||| Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| |||||||| || ||||| ||||||||| || ||||| || || |||||| | || Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||| ||| | ||||||| | ||||| || ||| || |||| ||||||||| || || Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| |||| ||| |||||||||| || || ||||| |||||||||||||| Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 || |||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| ||||||||| | |||| || || ||||||| ||| || || | || Sbjct 20576 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 20635 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| ||||||||||||||||| ||||| || ||||| || || ||||| || || || Sbjct 20636 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 20695 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || ||||||||||||||||| || |||||||| || || | ||||||||||| || Sbjct 20696 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGC 20755 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| || || |||||||| ||||| | ||| | ||| ||||||||||| Sbjct 20756 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAA 20815 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 || ||||||||||| || ||||| || | | || | |||||| | || | || || Sbjct 20816 CCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATAC 20875 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | | ||||| ||| || || |||||||| ||||| || ||||| || Sbjct 20876 TTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 20935 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 ||| ||||||||||| || || ||||||| ||| Sbjct 20936 TCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 567 bits (628), Expect = 8e-157 Identities = 729/995 (73%), Gaps = 9/995 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| ||| ||| | ||| Sbjct 5475 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5534 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||||||||| | || Sbjct 5535 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 5594 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGACG 161722 ||||||||| | || || || || ||||||| |||| |||||| ||||| ||| | Sbjct 5595 AGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATA 5652 Query 161723 CTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGG 161781 | | | |||||| || || || || ||||||||||| || ||||| ||||| | Sbjct 5653 GTTTAGCGCATTCT-TTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 5711 Query 161782 TGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATT 161841 ||| ||| | || || || |||| |||||| || || || || ||||| | || || Sbjct 5712 TGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAATA 5771 Query 161842 GGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGC 161900 || |||||| | ||||| ||||| |||||||| ||| || | | || ||||| ||||| Sbjct 5772 GGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGC 5830 Query 161901 TATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGG 161960 || || |||||||| || |||||||||||||| || || || || ||||| || || Sbjct 5831 AATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 5890 Query 161961 ACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACT 162020 ||||| |||||||| || || ||||| || || ||||| || || ||| | || Sbjct 5891 GCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCT 5950 Query 162021 TTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGG 162080 || | ||||| || || ||||||||||| || || || || |||||||| || || || Sbjct 5951 CTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGG 6010 Query 162081 TATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTA 162140 | | ||||| | ||||||||| | |||||||| |||| ||||| ||||| || | | Sbjct 6011 TGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 6070 Query 162141 CCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGAC 162200 |||||||||| |||||||| || |||||| || | || |||| ||| || || Sbjct 6071 TGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAAC 6130 Query 162201 TTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAA 162260 || || ||||| ||||||||||| || ||||| || ||||| || |||||||| || Sbjct 6131 CTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 6190 Query 162261 TAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTC 162320 ||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| | Sbjct 6191 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 6250 Query 162321 TATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGAT 162380 | | || | | || | || || || || ||||| |||||||| || |||||||| || Sbjct 6251 TCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAAT 6310 Query 162381 TCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGA 162440 ||| |||||||| |||||||||||||| || ||||||||||| ||||| || || || || Sbjct 6311 TCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGA 6370 Query 162441 AGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGA 162500 |||| |||| || ||| |||| | ||||| || ||||| ||| || |||||||||| Sbjct 6371 AGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 6430 Query 162501 GGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||| ||||| || | || ||||| || | ||||| Sbjct 6431 GGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 6464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551337934379400