Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2 241 5e-61 seq3 159 1e-36 seq10 96.9 1e-17 seq6 80.6 1e-12 >seq2 Length=49040938 Score = 241 bits (266), Expect = 5e-61 Identities = 342/474 (72%), Gaps = 34/474 (7%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 36375506 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 36375447 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| | ||||| ||||||| || Sbjct 36375446 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGATTCGGACCTCCACTTAGT 36375387 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 36375386 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 36375327 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || | ||||||| |||||||||||||||||||| | ||| Sbjct 36375326 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 36375278 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 36375277 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA 36375220 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 || || | || | |||| || ||| || | ||||||| || ||||| Sbjct 36375219 GGG--GCTGA---GC----CTCCTCCCAC-TCTTGGGAGCTTACGGTTTCATGTTCTATT 36375170 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||||| ||||| ||||||||| ||||||||||||||| | | |||||||||| Sbjct 36375169 TCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCA 36375110 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 36375109 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 36375056 >seq3 Length=52284309 Score = 159 bits (176), Expect = 1e-36 Identities = 263/374 (70%), Gaps = 33/374 (9%) Strand=Plus/Minus Query 237 GGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCG 296 ||||||| ||||||| || | || | |||||| |||| |||||||||||||| | Sbjct 37157656 GGTTCGGACCTCCACTTAGTTTCACTCAAGCTTCATCCTGGTCATGGATAGATCACCCAG 37157597 Query 297 CTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 |||||||| | | | ||| || | ||||||| |||||||||||||||||||| Sbjct 37157596 GTTCGGGTCCATAAGCAGTGACAATT----GCCCTATGAAGACTCGCTTTCGCTACGGCT 37157541 Query 355 AC--------CCCACACGGGTTAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCT 405 | ||| |||||| || ||| | | | |||| |||||||||| Sbjct 37157540 CCTGTGGTTTCCC-------TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCT 37157490 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 |||| |||||||| |||| || || | | || |||| || | ||| || Sbjct 37157489 TCAACAGGCACGCGGTCAGAGGGG--CTGAG-----CCTC--CTCCCACTGCTTGGGAGC 37157439 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||| || ||||||||||||||| |||| ||||||||| ||||||||||| Sbjct 37157438 TTACGGTTTCATGTTCTATTTCACTCCCCGATGAGGGTTCTTTTCACCCTTCCCTCACGG 37157379 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| | | |||||||||||| |||||||||||| ||| |||||||| | |||| Sbjct 37157378 TACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATT 37157319 Query 586 CACACGAAATTTCA 599 |||||| ||| || Sbjct 37157318 CACACGGGATTCCA 37157305 Score = 104 bits (114), Expect = 8e-20 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 33672373 GGTTTCATGTTCTATTTCACTCCCGAT--GGGGTTCTTTTCACCCTTCCCTCACGGTACT 33672316 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | ||||| |||||| |||||||||||| ||| |||||||| |||||||| Sbjct 33672315 ACTTCACTATCAGTCACCTAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGTTGATTCACA 33672256 Query 590 C 590 | Sbjct 33672255 C 33672255 >seq10 Length=43275151 Score = 96.9 bits (106), Expect = 1e-17 Identities = 163/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAAC 384 ||||||| |||||||||||||||||||| | |||||| || ||| | Sbjct 22302049 GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCTTAACCAAGC--CACTGC 22301992 Query 385 GCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | | |||| |||||||||||||| |||||||| |||| || || | | Sbjct 22301991 CTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGGGG--CTGAG-----CC 22301939 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 || |||| || | ||| || | ||||||| || |||||||| |||||| ||||| Sbjct 22301938 TC--CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCA-TCCCCGATGGGGGT 22301882 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552 ||||||||| ||||||||||||||| | | |||||||||||| |||| Sbjct 22301881 -CTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGA 22301834 >seq6 Length=31977256 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||| |||||||||||| | | || || |||| |||||| Sbjct 26717477 GCTGCGCCTCAACGCATTTCGGAGAGAACCAGCTAGCTCTGGATTCGAGTGGCATTTCAC 26717536 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||| ||||| ||||| || | | |||||| | ||| |||| Sbjct 26717537 CCCTAACCACAACTCATCGGCTGATTCTTCAACATCAGTCGGTT 26717580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817587131392