Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29]
708 sequences; 521,076,696 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq2 241 5e-61
seq3 159 1e-36
seq10 96.9 1e-17
seq6 80.6 1e-12
>seq2
Length=49040938
Score = 241 bits (266), Expect = 5e-61
Identities = 342/474 (72%), Gaps = 34/474 (7%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 36375506 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 36375447
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| | ||||| ||||||| ||
Sbjct 36375446 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGATTCGGACCTCCACTTAGT 36375387
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 36375386 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 36375327
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366
|| | ||||||| |||||||||||||||||||| | |||
Sbjct 36375326 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 36375278
Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425
|||||| || ||| | | | |||| |||||||||||||| |||||||| ||||
Sbjct 36375277 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA 36375220
Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485
|| || | || | |||| || ||| || | ||||||| || |||||
Sbjct 36375219 GGG--GCTGA---GC----CTCCTCCCAC-TCTTGGGAGCTTACGGTTTCATGTTCTATT 36375170
Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||||| ||||| ||||||||| ||||||||||||||| | | ||||||||||
Sbjct 36375169 TCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCA 36375110
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 36375109 CCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 36375056
>seq3
Length=52284309
Score = 159 bits (176), Expect = 1e-36
Identities = 263/374 (70%), Gaps = 33/374 (9%)
Strand=Plus/Minus
Query 237 GGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCG 296
||||||| ||||||| || | || | |||||| |||| |||||||||||||| |
Sbjct 37157656 GGTTCGGACCTCCACTTAGTTTCACTCAAGCTTCATCCTGGTCATGGATAGATCACCCAG 37157597
Query 297 CTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354
|||||||| | | | ||| || | ||||||| ||||||||||||||||||||
Sbjct 37157596 GTTCGGGTCCATAAGCAGTGACAATT----GCCCTATGAAGACTCGCTTTCGCTACGGCT 37157541
Query 355 AC--------CCCACACGGGTTAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCT 405
| ||| |||||| || ||| | | | |||| ||||||||||
Sbjct 37157540 CCTGTGGTTTCCC-------TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCT 37157490
Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465
|||| |||||||| |||| || || | | || |||| || | ||| ||
Sbjct 37157489 TCAACAGGCACGCGGTCAGAGGGG--CTGAG-----CCTC--CTCCCACTGCTTGGGAGC 37157439
Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525
| ||||||| || ||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 37157438 TTACGGTTTCATGTTCTATTTCACTCCCCGATGAGGGTTCTTTTCACCCTTCCCTCACGG 37157379
Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585
|||| | | |||||||||||| |||||||||||| ||| |||||||| | ||||
Sbjct 37157378 TACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATT 37157319
Query 586 CACACGAAATTTCA 599
|||||| ||| ||
Sbjct 37157318 CACACGGGATTCCA 37157305
Score = 104 bits (114), Expect = 8e-20
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || ||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 33672373 GGTTTCATGTTCTATTTCACTCCCGAT--GGGGTTCTTTTCACCCTTCCCTCACGGTACT 33672316
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| | ||||| |||||| |||||||||||| ||| |||||||| ||||||||
Sbjct 33672315 ACTTCACTATCAGTCACCTAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGTTGATTCACA 33672256
Query 590 C 590
|
Sbjct 33672255 C 33672255
>seq10
Length=43275151
Score = 96.9 bits (106), Expect = 1e-17
Identities = 163/229 (71%), Gaps = 14/229 (6%)
Strand=Plus/Minus
Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAAC 384
||||||| |||||||||||||||||||| | |||||| || ||| |
Sbjct 22302049 GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCTTAACCAAGC--CACTGC 22301992
Query 385 GCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443
| | |||| |||||||||||||| |||||||| |||| || || | |
Sbjct 22301991 CTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGGGG--CTGAG-----CC 22301939
Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503
|| |||| || | ||| || | ||||||| || |||||||| |||||| |||||
Sbjct 22301938 TC--CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCA-TCCCCGATGGGGGT 22301882
Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552
||||||||| ||||||||||||||| | | |||||||||||| ||||
Sbjct 22301881 -CTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGA 22301834
>seq6
Length=31977256
Score = 80.6 bits (88), Expect = 1e-12
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||||||| |||||||||||| | | || || |||| ||||||
Sbjct 26717477 GCTGCGCCTCAACGCATTTCGGAGAGAACCAGCTAGCTCTGGATTCGAGTGGCATTTCAC 26717536
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240
||||| ||||| ||||| || | | |||||| | ||| ||||
Sbjct 26717537 CCCTAACCACAACTCATCGGCTGATTCTTCAACATCAGTCGGTT 26717580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817587131392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |