Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29]
708 sequences; 521,076,696 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq6 190 5e-46
seq10 125 2e-26
seq8 123 6e-26
seq2 87.8 4e-15
seq3 86.0 2e-14
>seq6
Length=31977256
Score = 190 bits (210), Expect = 5e-46
Identities = 154/185 (83%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
|| || ||||||||| | | |||||||||| ||| |||||||| ||||||||| | ||
Sbjct 16514242 ACTCGTAGGCCTTCTACCTTCACGCGGCATTGCTCTGTCAGGCTTTCGCCCATTGCGGAA 16514301
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 16514302 AATTTCCCACTGCTGCCTCCCGT-GGAGTCTGGGTCGTGTCTCAGTCCCAGTGTGGCTGA 16514360
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||||||| |||| |||||| ||| | ||| || | |||||||||
Sbjct 16514361 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGC 16514420
Query 191 TAATC 195
|||||
Sbjct 16514421 TAATC 16514425
>seq10
Length=43275151
Score = 125 bits (138), Expect = 2e-26
Identities = 104/127 (82%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 66 TGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125
|| || |||| |||||| ||||| || ||||||||||| |||||||||||| ||||||||
Sbjct 39025749 TGAAAAATTCTCCACTGTTGCCTTCCCTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 39025808
Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAA 185
|||| |||||||||| |||| |||| |||| | | || ||| || ||| || | ||||
Sbjct 39025809 GCTGATCATCCTCTCGGACCTGCTATTGATCATTGTCTTGGTAAGCTATTGCCTCACCAA 39025868
Query 186 CTAGCTA 192
|||||||
Sbjct 39025869 CTAGCTA 39025875
Score = 75.2 bits (82), Expect = 3e-11
Identities = 67/83 (81%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 29982655 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 29982714
Query 62 ATTGTGCAATATTCCCCACTGCT 84
||||| ||| |||||||||||||
Sbjct 29982715 ATTGTCCAAGATTCCCCACTGCT 29982737
>seq8
Length=59662532
Score = 123 bits (136), Expect = 6e-26
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119
|| ||| | || |||| ||| ||||| | ||||||||||||||| | |||| ||||| ||
Sbjct 2881164 CCTTTGCGGAAAATTCTCCATTGCTGTCACCCGTAGGAGTCTGGCCTGTGTTTCAGTCCC 2881223
Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179
|||||| ||| |||||||| | ||||||||| |||| |||||| ||| | ||| ||
Sbjct 2881224 AGTGTGACTGATCATCCTCACGGACCAGCTATTGATCATCGCCTTGGTAAGTTATTGCCT 2881283
Query 180 CGCCAACTAGCTAATC 195
| ||||||||||||||
Sbjct 2881284 CACCAACTAGCTAATC 2881299
>seq2
Length=49040938
Score = 87.8 bits (96), Expect = 4e-15
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | |||||| ||| ||| | |||||||| ||||||||| | ||
Sbjct 15302246 ACCCGTAGGCCTTCTACCTTCACGCGACATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 15302187
Query 71 TATTCCCCACTGCTGCCT 88
|||||||||||||||||
Sbjct 15302186 AATTCCCCACTGCTGCCT 15302169
Score = 82.4 bits (90), Expect = 2e-13
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170
|| ||| |||| |||| || |||||||||| ||||||||| |||| |||||| ||| |
Sbjct 2980063 CTTAGTCCCAGCGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAG 2980122
Query 171 CCATTACCCCGCCAACTAGCTAATC 195
| ||| || | ||||||||||||||
Sbjct 2980123 CTATTGCCTCACCAACTAGCTAATC 2980147
>seq3
Length=52284309
Score = 86.0 bits (94), Expect = 2e-14
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
|||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| ||
Sbjct 28368451 ACCCATAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAAAA 28368392
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 102
|||| ||| || |||||| |||||||||||
Sbjct 28368391 AATTCTCCATTGTTGCCTCTTGTAGGAGTCTG 28368360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222391345408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |