Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq6 194 2e-44 seq2 174 2e-38 seq7 159 4e-34 seq9 150 2e-31 seq1 143 3e-29 seq8 136 4e-27 seq4 127 2e-24 seq11 104 3e-17 >seq6 Length=31977256 Score = 194 bits (214), Expect = 2e-44 Identities = 480/717 (67%), Gaps = 25/717 (3%) Strand=Plus/Plus Query 161803 TGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 161862 |||| |||||| | ||||| || ||||| | | || | | |||| | | ||| | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 161863 GAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT---ATTGCTTTCTCTGGTCC 161918 |||||||||| | || || | | | ||||| ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAAT-TACAACCTTATAATAATGTAATTGCATTCTCAGGTCC 21888423 Query 161919 TATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTT 161978 |||| | ||||||| || || || || ||||| ||||| |||| || ||||| Sbjct 21888424 AATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTT 21888483 Query 161979 CGCGCCATCGTTTGGGGTTGCCGCTA-TTTTCAGGT--TCTTACTTTTCCTACAAGGTTT 162035 || || ||| | || |||| |||||| | || || |||||| | || ||| Sbjct 21888484 TGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAA--AGATTT 21888541 Query 162036 CCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGC 162095 | | | |||||| | || || || || ||| |||| || | | | ||||||| ||| Sbjct 21888542 C-ATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGC 21888600 Query 162096 TTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACA 162155 | || | |||||||| |||| || || |||| || | | |||||||||| Sbjct 21888601 ACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGG 21888660 Query 162156 AGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGA-CTTACTCGATGGTTA 162214 | |||||| || |||||| || | || ||| || | | | || || ||| ||| Sbjct 21888661 TGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTA 21888720 Query 162215 CTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAG-TAATAAGCGTTGGTTG 162273 ||| || || || ||||| || ||||| || ||| |||| |||||||| |||||| Sbjct 21888721 CTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTA 21888780 Query 162274 CATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162333 ||||| |||||| | || || || || | || | || | ||| | | || || || Sbjct 21888781 CATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTT 21888840 Query 162334 GGACTCGCTCTT-AATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGA 162392 || ||| ||| || || |||||||| || || || ||||| || || ||||| || Sbjct 21888841 GGT-TCGTCCTTGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA 21888899 Query 162393 GGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGC 162452 ||| | || || ||||| || ||||| |||| || |||||| ||||||| Sbjct 21888900 ----------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGC 21888949 Query 162453 ATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCT 162509 |||| || || | |||| | ||||| |||||| |||||| ||| || ||||| Sbjct 21888950 ATGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCT 21889006 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| ||| | ||||| ||||| || |||| ||| ||||| || ||||| || Sbjct 31665047 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31665106 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||| |||||||| | |||||||| || ||| | |||| || || || ||| Sbjct 31665107 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31665166 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| ||||| ||||| || ||| |||| ||| ||||| || |||||||||||| Sbjct 31665167 GATGGTAACTTCCTTGATGACGACCAAATTGAGCAAGGCTTTGTTCTCACCTGCGTTGCT 31665226 Query 161140 TATCCCACTTCTGATGT 161156 ||||||||||||||||| Sbjct 31665227 TATCCCACTTCTGATGT 31665243 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| ||| | ||||| ||||| || |||| ||| ||||| || ||||| || Sbjct 31674083 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31674142 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||| |||||||| | |||||||| || ||| | |||| || || || ||| Sbjct 31674143 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31674202 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| ||||| ||||| || ||| ||||| ||| ||||| || ||||| |||||| Sbjct 31674203 GATGGTAACTTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGCT 31674262 Query 161140 TATCCCACTTCTGATGT 161156 ||||||||||||||||| Sbjct 31674263 TATCCCACTTCTGATGT 31674279 >seq2 Length=49040938 Score = 174 bits (192), Expect = 2e-38 Identities = 277/393 (70%), Gaps = 16/393 (4%) Strand=Plus/Plus Query 162145 GATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTAC 162204 |||||||| |||||||| || | |||| || | || |||| | || ||||| Sbjct 27892975 GATGGTGATAGTGCAAATACAATCTGTGTTTTTAACCCAACCCAAGCTTAAGAAACTTAT 27893034 Query 162205 TCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAG 162264 || ||||| ||| || || || ||||| || ||||| || |||||||| ||| | Sbjct 27893035 TCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATTA- 27893091 Query 162265 CGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATC 162324 |||||||||||| | || || || || || ||| | |||| ||| || | Sbjct 27893092 ---------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATGAGTGCTCTT 27893142 Query 162325 GGTATTATTGGACTCGCTCTTAATCTT-CGTGCTTACGACTTTGTATCTCAGGAGATTC- 162382 | || | || || ||| | ||| |||||||| || || || ||||| || ||| Sbjct 27893143 AGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCTCAAGAAATTTT 27893201 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 | |||||||| |||||||||||||| | || |||||||| ||||| ||||| || |||| Sbjct 27893202 GCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCTTAAACGAAG 27893261 Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502 || |||||| ||| | ||| | ||||| | ||||| ||| || |||||||||||| Sbjct 27893262 GTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATATTCCCTGAGG 27893321 Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | ||||| || | |||||||| || | ||||| Sbjct 27893322 AGGTTCTACCACGTGGTAACGCTCT-TTAATGG 27893353 >seq7 Length=51758522 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 ||| ||||||||||| || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGT 47750187 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| || || || ||| ||||||| ||| | |||| || | ||||| Sbjct 47750188 TGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCA 47750247 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || || || |||| ||||||| | || || ||||||||||| || | |||| |||| Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 160344 ||| || || || || ||||| ||||||||||| || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq9 Length=37469608 Score = 150 bits (166), Expect = 2e-31 Identities = 361/546 (66%), Gaps = 0/546 (0%) Strand=Plus/Plus Query 159850 GTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTT 159909 ||| || || ||||||| || | | |||| | ||||| | || || |||| || Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACTTTTGTATTTATTATCGCTTT 1917820 Query 159910 CATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCAT 159969 |||| ||| || || ||||| | ||||| || | || || || ||| || || | Sbjct 1917821 TATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACT 1917880 Query 159970 GTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCA 160029 || || ||||| ||||| |||||||| | ||| ||| || || | | | || Sbjct 1917881 TTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCA 1917940 Query 160030 CTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTT 160089 || ||||| || ||||||| | | | || || || || || |||| ||||||| Sbjct 1917941 TTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTA 1918000 Query 160090 CCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGA 160149 |||| | || | || ||| | | | | | ||| ||||||||||| ||||| Sbjct 1918001 TGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGGA 1918060 Query 160150 ACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGC 160209 ||| | ||| | ||||||| || ||||| ||||||||| || |||| | || Sbjct 1918061 ACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGC 1918120 Query 160210 TGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTAT 160269 |||| | || ||| ||| | |||| || | ||||| || || || |||| || Sbjct 1918121 AGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAAT 1918180 Query 160270 GCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATAT 160329 |||| | || || | ||||||||| || | |||| ||||||| || || || ||||| Sbjct 1918181 GCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATAT 1918240 Query 160330 CCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTC 160389 |||||||||| || ||| || | |||| |||| ||||| || || || ||| Sbjct 1918241 TCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCAG 1918300 Query 160390 TGCTAT 160395 |||||| Sbjct 1918301 TGCTAT 1918306 >seq1 Length=52205531 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 162223 CGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTT 162282 || || ||||| || ||||| || |||||||| ||||| |||||||| ||||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 162283 ATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCT 162342 ||| | || || || || | ||| | |||| ||| || | || | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 162343 CTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAA 162402 || || | |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 162403 TTTGAAACCTTCTACACCAAGAATATCCTCTT 162434 ||||| || ||||||||||| ||||| ||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 136 bits (150), Expect = 4e-27 Identities = 186/260 (72%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 |||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 1232873 ACTCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT------- 1232821 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | |||||| |||||||||||| | || || || || | ||| | || | ||| || Sbjct 1232820 --CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTC 1232763 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | || | | || | || | || | ||||||| || || || ||||| || || | Sbjct 1232762 TTGGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCC 1232703 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 | |||||||| ||||||||||||| || ||| ||| ||| ||||| ||||| || ||| Sbjct 1232702 GCGCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAG 1232645 Query 162443 GTCTTCGTGCATGGTTGGCA 162462 || ||||||| ||| ||||| Sbjct 1232644 GTATTCGTGCGTGGATGGCA 1232625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 160650 GTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAG 160709 |||| || |||||||| ||| | | || | ||||| | || | || || ||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 160710 ACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACT 160769 | | ||||||| ||| || || |||||||||||||| || ||||| ||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 160770 TCCCTCTCGACCTTGCTGC 160788 ||||||| || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 127 bits (140), Expect = 2e-24 Identities = 150/198 (76%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 162340 GCTCTTAATCTT-CGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCC 162398 |||| | | ||| |||||||| || || || ||||| || || |||||| | | ||| | Sbjct 43482219 GCTCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCAT-GAAAGATTC 43482277 Query 162399 TGAATTTGAAACCTTCTACACCAAGAA-TATCCTCTTGAATGAAGGTCTTCGTGCATGGT 162457 ||||||||| || || ||||| || || ||| ||||| || |||||| ||||||| ||| Sbjct 43482278 TGAATTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGA 43482337 Query 162458 TGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAG 162517 ||||| ||||| || ||||| ||| || ||||||||||||| ||||| || | | Sbjct 43482338 TGGCAATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTG 43482397 Query 162518 GTAACGCACTGTGAATGG 162535 | ||||| || | ||||| Sbjct 43482398 GAAACGCTCT-TTAATGG 43482414 >seq11 Length=50367376 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| |||| |||| || || || || || || || ||||| || |||||||| Sbjct 9650241 GATGATACATATATCCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCCTGC 9650300 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 || || || ||||||||||| |||||||| ||||||| ||| | || ||||| ||| Sbjct 9650301 CGCGCGGGAGCTTGCTCTACCTGTGCTGGGAAGATTGTTGCTGGCTCAGTGGATCAGTCT 9650360 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||| ||||| | ||||| | ||| ||||| || ||||| | | Sbjct 9650361 GATGGCTCATTCCTTGATGACAACCAACTGAAGGAAGGCTTTGTACTTACCTGTATCTCC 9650420 Query 161140 TATCCCACTTCTGAT 161154 ||||| ||| | ||| Sbjct 9650421 TATCCAACTGCAGAT 9650435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551371120322400