Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9 205 1e-47 seq6 190 2e-43 seq7 149 7e-31 seq1 145 9e-30 seq2 136 4e-27 seq8 122 1e-22 seq4 87.8 2e-12 >seq9 Length=37469608 Score = 205 bits (226), Expect = 1e-47 Identities = 515/780 (66%), Gaps = 22/780 (3%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 |||| ||||||| | | | ||| ||||| ||||||| || | | |||| | |||| Sbjct 1917741 AATCTTCTTTACATATGATTGTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACT 1917800 Query 160659 GTCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAA 160718 | ||||||| || || | | ||| || || ||||| | || ||||| | || Sbjct 1917801 TTTGTATTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAG 1917860 Query 160719 CCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 160778 || ||| ||| || || | ||||||||||| ||||| |||||||| | ||| | || Sbjct 1917861 CCTGTTTTTGGATCCCTACTTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACT 1917920 Query 160779 TCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGG 160838 | || || | | | || || || || || ||||||| | | | |||||||||| Sbjct 1917921 TTTGCGGCTATAGATTTGCATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGC 1917980 Query 160839 CTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGC 160898 || ||||| | |||||||| |||| | || | || ||| | | | | ||| Sbjct 1917981 CTATACAACGACGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGC 1918040 Query 160899 TACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GT 160957 ||||||||||| || ||||||||| || || | || |||| | ||||| ||| || Sbjct 1918041 TACATGGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGAT-TGCTGT 1918099 Query 160958 TGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 161017 ||||||||| | |||| ||| |||| | || || ||| | |||||||| | ||||| Sbjct 1918100 TGCATATTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCA 1918159 Query 161018 AGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGT 161077 ||| || || ||||| ||||| | || || | |||||| ||||| || ||| |||| Sbjct 1918160 AGGAAGCTTTTCGGATGGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGT 1918219 Query 161078 CTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 || ||| || || || || || ||||| | || ||| |||| |||| ||||||| Sbjct 1918220 ATTTCAGATTGAGCATAATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGT 1918279 Query 161138 CTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCG 161197 || || || || ||| || || ||| ||| | || |||| | || || Sbjct 1918280 ATTTGGCAACTCCCTATTCAGTGCTATAAATGATTCCTTAGTAACTTTCTACC---TTAA 1918336 Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257 |||| | || || | |||||||| ||||||||| | || | | Sbjct 1918337 TGAATCTGCT---------------AATGAAGGTTACAAATTTGGTCAAAAGGACAAAAT 1918381 Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317 ||| | || | |||||||||| ||| || | | ||||||| ||||| || || Sbjct 1918382 CTATGATATTATAGCTGCTCATGATTATTTTGTCGGATTGATCTTTCAATATGCAAGTTT 1918441 Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 161377 ||| || || |||| || | || ||||| | | ||| |||| | ||||| ||||| Sbjct 1918442 CAATAATTCTCGTT-TTTTAATTTTTTCCTAGTTGTTTGG-CTGTAATAGGTATTTGGTT 1918499 Score = 141 bits (156), Expect = 1e-28 Identities = 180/244 (74%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 160595 AAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGC 160654 ||| |||||||||||| | | ||||| ||||| ||||||| | ||| | ||| | || Sbjct 33213500 AAAAAATCGTCTTTACATAAGATGGTTTGGTGTTTTGATGATTCTTACTTTATTGACTGC 33213559 Query 160655 AACCGTCTG-CTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCC 160713 || | |||| ||||||| || || ||| |||||| || | || || || ||||| | Sbjct 33213560 AA-CTTCTGTATTTATTATCGCTTTTATTGTTGCTCCTCCATTAGATATTGATGGTATTC 33213618 Query 160714 GTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTC 160773 ||||||| | | ||| || | | |||||||| || ||||| ||||||||| || ||| Sbjct 33213619 GTGAACCTGATTTTGGATCCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTC 33213678 Query 160774 CTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATG 160833 || |||||| || || ||| | || || || || || |||||||| | ||| |||||| Sbjct 33213679 CTACTTCCACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGC-GACTCTGTTGATG 33213737 Query 160834 AATG 160837 |||| Sbjct 33213738 AATG 33213741 >seq6 Length=31977256 Score = 190 bits (210), Expect = 2e-43 Identities = 390/570 (68%), Gaps = 20/570 (4%) Strand=Plus/Plus Query 164268 AATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCT 164327 |||| ||||| ||||| ||||| |||| | | ||||| || |||||||| || || Sbjct 21888401 AATGTAATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCA 21888460 Query 164328 CTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGA-TCTTCAGATT 164386 || || || | | |||| |||||||| || ||| | || || | | |||| || Sbjct 21888461 CTGGGTCAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAAT- 21888519 Query 164387 CCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGT 164446 | || | || ||||| | || |||| |||||| | ||||| || |||||| |||| || Sbjct 21888520 CATCATATTTTTCCAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGT 21888579 Query 164447 TG-CAG-GCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAAT 164504 || || | || | |||| ||| || || || |||||||||||||| || ||||| | | Sbjct 21888580 TGTCATTGTAT--TGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGT 21888637 Query 164505 ACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAA-GA 164563 ||||| |||||||||||||| |||||| || || || | || || ||| Sbjct 21888638 ACTTTATTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCC 21888697 Query 164564 GGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTG- 164622 | || | || || || ||| | |||| || ||||| ||||| || || ||||| ||| Sbjct 21888698 GAAAAAAACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGT 21888757 Query 164623 CTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTT 164682 |||| ||||||| |||||| || || |||||| | ||||| || || | | | | Sbjct 21888758 TTTTCTCTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTAT 21888817 Query 164683 GGACAAGTTCTATTGGTATCATCGGTCTCG-CACTCAATCTTCGTGCTTATGATTTTGTG 164741 | | ||| | |||| || | ||| ||| | | || || |||||||||||||| || Sbjct 21888818 GAATGAGTGTTCTTGGGATAGTTGGT-TCGTCCTTGAACCTACGTGCTTATGATTTCGTT 21888876 Query 164742 TCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATC 164801 ||||| || || | ||| || |||| |||| || || || || || || Sbjct 21888877 TCTCAAGAAATCTGTGCAATAG----------ATTTAAGACTTTATACACTAAAAATATT 21888926 Query 164802 CTCCTCAATGAAGGACTCCGTGCCTGGATG 164831 || | || ||||| | ||||| |||||| Sbjct 21888927 TTCTTAAACGAAGGTATTCGTGCATGGATG 21888956 >seq7 Length=51758522 Score = 149 bits (164), Expect = 7e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 |||||||||||||| || || |||||| | || || || ||||| || ||||| ||| Sbjct 47750126 TGCTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGC 47750184 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || |||||||| || || | ||| || ||| | |||||||| | || Sbjct 47750185 TGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGG 47750244 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCT 161074 |||||| || || ||||||||||| | || || |||||||| ||||| || ||| | Sbjct 47750245 TCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGAT 47750304 Query 161075 TGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTT 161113 ||| || ||||| || || || || || ||||| || || Sbjct 47750305 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 145 bits (160), Expect = 9e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 164595 CGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTT 164654 ||||| ||||| || || ||||| ||||||| |||||| |||||||| || |||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 164655 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 164714 ||| | ||||| || || | || | |||| ||| || |||| | ||||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 164715 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAA 164774 || || | |||||||||||||| || ||||| || || | ||||| || ||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 164775 TTTGAGACGTTCTATACGAAGAACATCCTC 164804 |||||||| ||||| || || || || ||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTC 38350290 >seq2 Length=49040938 Score = 136 bits (150), Expect = 4e-27 Identities = 244/353 (69%), Gaps = 15/353 (4%) Strand=Plus/Plus Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || || |||| |||| ||||| || ||||| ||| || ||||| ||||| || || Sbjct 27893011 CCAACCCAAGCTTAAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATC 27893068 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTC 164672 ||||| ||||||| |||| | || ||||||||| | ||||| || || Sbjct 27893069 TTTGGGGTTGCTTTTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTA 27893118 Query 164673 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTT-CGTGCTTA 164731 || || | |||| ||| || || | || ||||| || || | ||| |||||||| Sbjct 27893119 ATTGGTTTATGGATGAGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTA 27893177 Query 164732 TGATTTTGTGTCTCAGGAGATTA-GAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATA 164790 |||||| || ||||| || ||| | ||||| || |||||||||||||| | || || | Sbjct 27893178 TGATTTCGTTTCTCAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACA 27893237 Query 164791 CGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCAC 164850 | || || || ||| | || ||||| | |||| ||||| || | ||| |||| | Sbjct 27893238 CCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTC 27893297 Query 164851 ACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 | ||| || |||| || ||||| ||||| || | |||||||| || ||| Sbjct 27893298 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAA 27893350 >seq8 Length=59662532 Score = 122 bits (134), Expect = 1e-22 Identities = 182/259 (70%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 164575 ACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATA 164634 |||| ||||| ||||| || ||||| ||||| || || ||||| ||||||| Sbjct 1232873 ACTCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT------- 1232821 Query 164635 AGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTA 164694 | |||||| || ||||||||| | ||||| || || | || | || | ||| || Sbjct 1232820 --CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTC 1232763 Query 164695 TTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTA 164754 |||| | ||||| | || | || | ||||||||||||| || ||||| || || Sbjct 1232762 TTGGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCC 1232703 Query 164755 GAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAG 164814 | ||||| || |||||||||||||||| ||| | | || || || ||| | || ||| Sbjct 1232702 GCGCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAG 1232645 Query 164815 GACTCCGTGCCTGGATGGC 164833 | | ||||| |||||||| Sbjct 1232644 GTATTCGTGCGTGGATGGC 1232626 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 161421 TTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGAC 161480 || || |||||||| ||| | | ||| |||| || || | || ||||||||||| Sbjct 31293222 TTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGAT 31293281 Query 161481 GTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTC 161540 || | || || |||||||||||||||||||| ||||| || ||||||||||| || ||| Sbjct 31293282 ATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATTTC 31293341 Query 161541 CCTCTGGATCTCGCTGC 161557 ||||| ||||| ||||| Sbjct 31293342 CCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 164724 CGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACG 164783 |||||||||||||| || ||||| || || | ||| | | ||| |||||||||| || Sbjct 43482232 CGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTCTGAATTTGATACT 43482290 Query 164784 TTCTATAC-GAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGC--TCCAGTA 164840 || || || || || || ||| | || ||||| | ||||| |||||||| | || | Sbjct 43482291 TTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCAATTCA--A 43482348 Query 164841 GACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTC 164900 || ||||| || ||| || |||| || ||||| ||||| || | || ||||| || Sbjct 43482349 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTT 43482408 Query 164901 TAA 164903 ||| Sbjct 43482409 TAA 43482411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559323049947200