Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 82.4 1e-13
seq7 82.4 1e-13
seq119 78.8 2e-12
>seq9615
Length=156766
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 106555 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 106614
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 106615 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 106673
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 106674 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 106729
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 106730 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 106789
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 106790 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 106849
Query 312 AATCAAAC 319
| || |||
Sbjct 106850 ACTCGAAC 106857
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 135101 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 135042
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 135041 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 134983
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 134982 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 134927
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 134926 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 134867
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 134866 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 134807
Query 312 AATCAAAC 319
| || |||
Sbjct 134806 ACTCGAAC 134799
>seq7
Length=3634883
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 3427005 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 3427064
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 3427065 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 3427123
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 3427124 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 3427179
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 3427180 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 3427239
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 3427240 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 3427299
Query 312 AATCAAAC 319
| || |||
Sbjct 3427300 ACTCGAAC 3427307
>seq119
Length=756297
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 479068 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 479009
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 479008 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 478949
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 478948 AACCAAGATCGGATATAGCTGGT 478926
Score = 78.8 bits (86), Expect = 2e-12
Identities = 205/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 614302 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 614243
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 614242 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 614184
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 614183 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 614128
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| || || |||| ||||| ||| | | ||||
Sbjct 614127 GGACCCGAACCTGGGTGATCTATACATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 614068
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 614067 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 614008
Query 312 AATCAAAC 319
| || |||
Sbjct 614007 ACTCGAAC 614000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972706465280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |