Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq9615 82.4 1e-13 seq7 82.4 1e-13 seq119 78.8 2e-12 >seq9615 Length=156766 Score = 82.4 bits (90), Expect = 1e-13 Identities = 206/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 106555 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 106614 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 106615 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 106673 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 106674 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 106729 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 106730 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 106789 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 106790 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 106849 Query 312 AATCAAAC 319 | || ||| Sbjct 106850 ACTCGAAC 106857 Score = 82.4 bits (90), Expect = 1e-13 Identities = 206/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 135101 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 135042 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 135041 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 134983 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 134982 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 134927 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 134926 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 134867 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 134866 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 134807 Query 312 AATCAAAC 319 | || ||| Sbjct 134806 ACTCGAAC 134799 >seq7 Length=3634883 Score = 82.4 bits (90), Expect = 1e-13 Identities = 206/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 3427005 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 3427064 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 3427065 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 3427123 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 3427124 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 3427179 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 3427180 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 3427239 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 3427240 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 3427299 Query 312 AATCAAAC 319 | || ||| Sbjct 3427300 ACTCGAAC 3427307 >seq119 Length=756297 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 479068 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 479009 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 479008 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 478949 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 478948 AACCAAGATCGGATATAGCTGGT 478926 Score = 78.8 bits (86), Expect = 2e-12 Identities = 205/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 614302 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 614243 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 614242 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 614184 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 614183 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 614128 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| || || |||| ||||| ||| | | |||| Sbjct 614127 GGACCCGAACCTGGGTGATCTATACATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 614068 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 614067 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 614008 Query 312 AATCAAAC 319 | || ||| Sbjct 614007 ACTCGAAC 614000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972706465280