Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq119 152 7e-35 seq9615 141 1e-31 seq7 141 1e-31 seq1309 98.7 1e-18 seq120 98.7 1e-18 seq1800 82.4 1e-13 seq5319 78.8 1e-12 >seq119 Length=756297 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 477527 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 477585 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 477586 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 477643 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 477644 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 477694 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 477695 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 477754 Query 246 GTA 248 ||| Sbjct 477755 GTA 477757 >seq9615 Length=156766 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 107911 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 107853 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 107852 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 107806 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 107805 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 107752 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 107751 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 107692 Query 246 GTA 248 ||| Sbjct 107691 GTA 107689 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 133745 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 133803 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 133804 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 133850 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 133851 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 133904 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 133905 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 133964 Query 246 GTA 248 ||| Sbjct 133965 GTA 133967 >seq7 Length=3634883 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3428361 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3428303 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 3428302 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3428256 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 3428255 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3428202 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 3428201 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 3428142 Query 246 GTA 248 ||| Sbjct 3428141 GTA 3428139 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| |||||||| |||| || | |||| | ||||| | ||| || |||| Sbjct 3523777 CCTTCCAGCACTGGGCAGGCATCAGCCCCCACACATGGCCTTAC-GACTTTGCGGAGACC 3523719 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 3523718 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3523672 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 3523671 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3523618 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 3523617 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 3523558 Query 246 GTA 248 ||| Sbjct 3523557 GTA 3523555 >seq1309 Length=56175 Score = 98.7 bits (108), Expect = 1e-18 Identities = 167/242 (69%), Gaps = 20/242 (8%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||||| ||| ||| || |||||| || ||||||| | ||| | ||| || ||||| Sbjct 47372 CTTCCGACACTGGGTAGACGTCAGCCCCTATACATGGTTTTAT-GACTTTGCGGAGACCT 47430 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 |||||||| |||||||||||| | || || || |||| || | Sbjct 47431 GTGTTTTTGGTAAACAGTCGCCTAGGCCTGGTCACTATGACCCCCT-------------T 47477 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || || || |||||||||||| ||||||||||||| |||||| || |||||| Sbjct 47478 TGTG----AGGAG--GCACCCCTTCTCTTGAAGTTACGGGGCTATTTTGTTGAGTTCCTT 47531 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | |||| | | | ||| ||||||||||||| |||||||||||||||| || Sbjct 47532 AGAGAGAGTTGTCTTGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCAGG 47591 Query 247 TA 248 || Sbjct 47592 TA 47593 >seq120 Length=744444 Score = 98.7 bits (108), Expect = 1e-18 Identities = 172/246 (70%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 3 TATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGG 62 || ||||||| ||||| ||||| |||| | || |||||| ||||| ||| ||| | Sbjct 333218 TAACCTTCCAGCACCGAGCAGGTGTCAAACTCTACACATCGTGTTACCA-CTTAGCAGAG 333160 Query 63 ACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAAC 122 ||| |||||||| |||||||||| | ||| || | | ||| || | | |||| Sbjct 333159 TCCTATGTTTTTAATAAACAGTCGTTACCCCCTGGTATGTGCCACTTTCCTAA--TCAAA 333102 Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 | | || || || |||| || |||||||||||||||| |||||| |||| || Sbjct 333101 AGATA-------AG-AGAGG-ACCCTTTTTCCCGAAGTTACGGGGTCATTTTACCGAGTT 333051 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||| || |||| | | | |||| || ||| |||||| || || || |||| |||| Sbjct 333050 CCTTCGACATGGTTCTCTCAAGCGCCCTATTATACTCTACTTGTTCATCTATGTCAGTTT 332991 Query 243 ACGGTA 248 |||| Sbjct 332990 GGGGTA 332985 >seq1800 Length=36583 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| ||||||||||||| |||||| || ||||||| | |||| Sbjct 6668 GGCACCCCTTCTCTTGAAGTTACGGGGCTATTTTGTTGAGTTCCTTAGAGAGAGTTGTAT 6727 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||| ||||| |||||||||||||||| |||| Sbjct 6728 TGCGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGGTTTCAGGTA 6775 >seq5319 Length=4086 Score = 78.8 bits (86), Expect = 1e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| |||||| |||||| |||||| || ||||||| | |||| Sbjct 1755 GGCACCCCTTCTCTTGAAGTTGCGGGGCTATTTTGTTGAGTTCCTTAGAGAGAGTTGTAT 1696 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||| ||||| |||||||||||||||| |||| Sbjct 1695 TGCGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGGTTTCAGGTA 1648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694335319895