Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq119 152 7e-35
seq9615 141 1e-31
seq7 141 1e-31
seq1309 98.7 1e-18
seq120 98.7 1e-18
seq1800 82.4 1e-13
seq5319 78.8 1e-12
>seq119
Length=756297
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 477527 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 477585
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 477586 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 477643
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 477644 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 477694
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 477695 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 477754
Query 246 GTA 248
|||
Sbjct 477755 GTA 477757
>seq9615
Length=156766
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 107911 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 107853
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 107852 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 107806
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 107805 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 107752
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 107751 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 107692
Query 246 GTA 248
|||
Sbjct 107691 GTA 107689
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 133745 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 133803
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 133804 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 133850
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 133851 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 133904
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 133905 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 133964
Query 246 GTA 248
|||
Sbjct 133965 GTA 133967
>seq7
Length=3634883
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 3428361 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3428303
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 3428302 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3428256
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 3428255 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3428202
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 3428201 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 3428142
Query 246 GTA 248
|||
Sbjct 3428141 GTA 3428139
Score = 136 bits (150), Expect = 5e-30
Identities = 176/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| |||||||| |||| || | |||| | ||||| | ||| || ||||
Sbjct 3523777 CCTTCCAGCACTGGGCAGGCATCAGCCCCCACACATGGCCTTAC-GACTTTGCGGAGACC 3523719
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 3523718 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3523672
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 3523671 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3523618
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 3523617 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 3523558
Query 246 GTA 248
|||
Sbjct 3523557 GTA 3523555
>seq1309
Length=56175
Score = 98.7 bits (108), Expect = 1e-18
Identities = 167/242 (69%), Gaps = 20/242 (8%)
Strand=Plus/Plus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
||||| ||| ||| || |||||| || ||||||| | ||| | ||| || |||||
Sbjct 47372 CTTCCGACACTGGGTAGACGTCAGCCCCTATACATGGTTTTAT-GACTTTGCGGAGACCT 47430
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
|||||||| |||||||||||| | || || || |||| || |
Sbjct 47431 GTGTTTTTGGTAAACAGTCGCCTAGGCCTGGTCACTATGACCCCCT-------------T 47477
Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186
|| || || |||||||||||| ||||||||||||| |||||| || ||||||
Sbjct 47478 TGTG----AGGAG--GCACCCCTTCTCTTGAAGTTACGGGGCTATTTTGTTGAGTTCCTT 47531
Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246
| | |||| | | | ||| ||||||||||||| |||||||||||||||| ||
Sbjct 47532 AGAGAGAGTTGTCTTGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCAGG 47591
Query 247 TA 248
||
Sbjct 47592 TA 47593
>seq120
Length=744444
Score = 98.7 bits (108), Expect = 1e-18
Identities = 172/246 (70%), Gaps = 12/246 (5%)
Strand=Plus/Minus
Query 3 TATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGG 62
|| ||||||| ||||| ||||| |||| | || |||||| ||||| ||| ||| |
Sbjct 333218 TAACCTTCCAGCACCGAGCAGGTGTCAAACTCTACACATCGTGTTACCA-CTTAGCAGAG 333160
Query 63 ACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAAC 122
||| |||||||| |||||||||| | ||| || | | ||| || | | ||||
Sbjct 333159 TCCTATGTTTTTAATAAACAGTCGTTACCCCCTGGTATGTGCCACTTTCCTAA--TCAAA 333102
Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
| | || || || |||| || |||||||||||||||| |||||| |||| ||
Sbjct 333101 AGATA-------AG-AGAGG-ACCCTTTTTCCCGAAGTTACGGGGTCATTTTACCGAGTT 333051
Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|||| || |||| | | | |||| || ||| |||||| || || || |||| ||||
Sbjct 333050 CCTTCGACATGGTTCTCTCAAGCGCCCTATTATACTCTACTTGTTCATCTATGTCAGTTT 332991
Query 243 ACGGTA 248
||||
Sbjct 332990 GGGGTA 332985
>seq1800
Length=36583
Score = 82.4 bits (90), Expect = 1e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||| ||||||||||||| |||||| || ||||||| | ||||
Sbjct 6668 GGCACCCCTTCTCTTGAAGTTACGGGGCTATTTTGTTGAGTTCCTTAGAGAGAGTTGTAT 6727
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||| ||||| |||||||||||||||| ||||
Sbjct 6728 TGCGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGGTTTCAGGTA 6775
>seq5319
Length=4086
Score = 78.8 bits (86), Expect = 1e-12
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||| |||||| |||||| |||||| || ||||||| | ||||
Sbjct 1755 GGCACCCCTTCTCTTGAAGTTGCGGGGCTATTTTGTTGAGTTCCTTAGAGAGAGTTGTAT 1696
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||| ||||| |||||||||||||||| ||||
Sbjct 1695 TGCGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGGTTTCAGGTA 1648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694335319895
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