Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 183 6e-44
seq7 183 6e-44
seq223 143 5e-32
seq7051 111 3e-22
seq119 111 3e-22
seq36 111 3e-22
seq966 89.7 1e-15
seq390 89.7 1e-15
seq3602 80.6 5e-13
>seq9615
Length=156766
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 108290 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 108349
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 108350 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 108408
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 108409 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 108468
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 108469 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 108518
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 133366 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 133307
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 133306 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 133248
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 133247 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 133188
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 133187 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 133138
>seq7
Length=3634883
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 3428740 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 3428799
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 3428800 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 3428858
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 3428859 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 3428918
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 3428919 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 3428968
>seq223
Length=428319
Score = 143 bits (158), Expect = 5e-32
Identities = 109/129 (84%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | ||| |||||||| |||||||
Sbjct 84037 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGATGAAAGTC 84096
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| |||
Sbjct 84097 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 84156
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 84157 CTAGGGATA 84165
>seq7051
Length=1661
Score = 111 bits (122), Expect = 3e-22
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||||||||| | |||||||| | |||| | || || ||||| |||||||
Sbjct 1201 AGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACTCGTTGAGTAGGGATGAAAGTC 1260
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| ||| ||||| | ||||||||| ||||| |||| ||||| | |||||||| |||
Sbjct 1261 GACTTTAGTGATCTGACGGTGCTGAGTGGAAGGGCCATCGCTTAATGGATAAAAATTACT 1320
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 1321 CTAGGGATA 1329
>seq119
Length=756297
Score = 111 bits (122), Expect = 3e-22
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 477172 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 477113
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 477112 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 477058
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | |||||||||||
Sbjct 477057 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAATGATCCGGGA 476998
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 476997 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 476947
>seq36
Length=1800412
Score = 111 bits (122), Expect = 3e-22
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||||||||| | |||||||| | |||| | || || ||||| |||||||
Sbjct 1518053 AGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACTCGTTGAGTAGGGATGAAAGTC 1517994
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
| ||| ||||| | ||||||||| ||||| |||| ||||| | |||||||| |||
Sbjct 1517993 GACTTTAGTGATCTGACGGTGCTGAGTGGAAGGGCCATCGCTTAATGGATAAAAATTACT 1517934
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 1517933 CTAGGGATA 1517925
>seq966
Length=86411
Score = 89.7 bits (98), Expect = 1e-15
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
||||||||||||||| || | |||||||| | |||| | || |||| || |||||||
Sbjct 83149 AGTGCAAAGGCAAAAAGGAGCTTGACTGCAAGACCCACCCATCGAGCAACGATGAAAGTC 83208
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||| | | || || |||| |||| ||||| | |||||||| |||
Sbjct 83209 GGCCTTAGTGATCTGACAATGTCGAGTGGATGGGCCATCGCTTAATAGATAAAAGTTACT 83268
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 83269 CTAGGGATA 83277
>seq390
Length=246364
Score = 89.7 bits (98), Expect = 1e-15
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
||||||||||||||| || | |||||||| | |||| | || |||| || |||||||
Sbjct 192607 AGTGCAAAGGCAAAAAGGAGCTTGACTGCAAGACCCACCCATCGAGCAACGATGAAAGTC 192548
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||| | | || || |||| |||| ||||| | |||||||| |||
Sbjct 192547 GGCCTTAGTGATCTGACAATGTCGAGTGGATGGGCCATCGCTTAATAGATAAAAGTTACT 192488
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 192487 CTAGGGATA 192479
>seq3602
Length=10618
Score = 80.6 bits (88), Expect = 5e-13
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
||||||||||||||| || | |||||||| | |||| | || |||| || |||||||
Sbjct 10079 AGTGCAAAGGCAAAAAGGAGCTTGACTGCAAGACCCACCCATCGAGCAACGATGAAAGTC 10138
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| |||| | || || |||| |||| ||||| | |||||||| |||
Sbjct 10139 GGCCTTAGCGATCTAACAATGTCGAGTGGATGGGCCATCGCTTAATAGATAAAAGTTACT 10198
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 10199 CTAGGGATA 10207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982305542240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |