Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq9615 107 2e-21 seq119 107 2e-21 seq7 107 2e-21 seq348 87.8 2e-15 seq218 86.0 7e-15 seq5319 84.2 2e-14 seq1309 84.2 2e-14 seq1800 80.6 3e-13 seq286 80.6 3e-13 seq362 73.4 4e-11 >seq9615 Length=156766 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 108130 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 108071 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 108070 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 108012 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 108011 ACAAGGAATTTCGCTACCTTAGGACCGTTA 107982 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 133526 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 133585 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 133586 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 133644 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 133645 ACAAGGAATTTCGCTACCTTAGGACCGTTA 133674 >seq119 Length=756297 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 477316 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 477375 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 477376 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 477435 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 477436 GACAAGGAATTTCGCTACCTTAGGACAGTTA 477466 >seq7 Length=3634883 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 3428580 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 3428521 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 3428520 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 3428462 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 3428461 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3428432 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| | | ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 3523908 TACGCCTTTCATACGGGTTGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTT 3523849 Query 173 A 173 | Sbjct 3523848 A 3523848 >seq348 Length=280399 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 47530 TACGCCTTTCATGCGGGTCGGAACTTACCCTACAAGGAATTTCGCTACCTTAGGACCGTT 47589 Query 173 A 173 | Sbjct 47590 A 47590 >seq218 Length=447883 Score = 86.0 bits (94), Expect = 7e-15 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || ||| || |||||||||| || | | ||||||| || Sbjct 56781 GGGTCTTTCTGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTCTATTTCACCGAA 56840 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| |||||| || |||| |||| ||||||||||| Sbjct 56841 C-CTCTCTCCGAGACAGTGCCTAGATCATTACACCTTTTGTGCGGGTCAGAACTTACCCG 56899 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||| | ||| Sbjct 56900 ACAAGGAATTTCGCTACCTTAGGATCATTA 56929 >seq5319 Length=4086 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || || |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2033 TACGCCTTTTATGGAGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTT 1974 Query 173 A 173 | Sbjct 1973 A 1973 >seq1309 Length=56175 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || || |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 47240 TACGCCTTTTATGGAGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTT 47299 Query 173 A 173 | Sbjct 47300 A 47300 >seq1800 Length=36583 Score = 80.6 bits (88), Expect = 3e-13 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 127 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 6436 AGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTTA 6482 >seq286 Length=334870 Score = 80.6 bits (88), Expect = 3e-13 Identities = 107/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || ||| || |||||||||| || | | ||||||| || Sbjct 270637 GGGTCTTTCTGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTCTATTTCACCGAA 270696 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| |||||| || |||| |||| ||||||||||| Sbjct 270697 C-CTCTCTCCGAGACAGTGCCTAGATCATTACACCTTTTGTGCGGGTCAGAACTTACCCG 270755 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||| |||||||| | ||| Sbjct 270756 ACAAGGAATTTCGCTGCCTTAGGATCATTA 270785 >seq362 Length=270902 Score = 73.4 bits (80), Expect = 4e-11 Identities = 90/127 (71%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNN 106 ||| || ||||||||| || | | ||||||||| | | || | ||||||| Sbjct 249820 GTACTCCACATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGC 249761 Query 107 NNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 ||||| ||| || |||||| ||||| | ||||||||||||||||||||||| Sbjct 249760 AATCGTTACACACTTCATGGAGGTCGCTACTTATGCAACAAGGAATTTCGCTACCTTAGG 249701 Query 167 ACCGTTA 173 || |||| Sbjct 249700 ACAGTTA 249694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547149030885