Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 107 2e-21
seq119 107 2e-21
seq7 107 2e-21
seq348 87.8 2e-15
seq218 86.0 7e-15
seq5319 84.2 2e-14
seq1309 84.2 2e-14
seq1800 80.6 3e-13
seq286 80.6 3e-13
seq362 73.4 4e-11
>seq9615
Length=156766
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 108130 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 108071
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 108070 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 108012
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 108011 ACAAGGAATTTCGCTACCTTAGGACCGTTA 107982
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 133526 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 133585
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 133586 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 133644
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 133645 ACAAGGAATTTCGCTACCTTAGGACCGTTA 133674
>seq119
Length=756297
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 477316 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 477375
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 477376 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 477435
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 477436 GACAAGGAATTTCGCTACCTTAGGACAGTTA 477466
>seq7
Length=3634883
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 3428580 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 3428521
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 3428520 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 3428462
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 3428461 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3428432
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| | | ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 3523908 TACGCCTTTCATACGGGTTGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTT 3523849
Query 173 A 173
|
Sbjct 3523848 A 3523848
>seq348
Length=280399
Score = 87.8 bits (96), Expect = 2e-15
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 47530 TACGCCTTTCATGCGGGTCGGAACTTACCCTACAAGGAATTTCGCTACCTTAGGACCGTT 47589
Query 173 A 173
|
Sbjct 47590 A 47590
>seq218
Length=447883
Score = 86.0 bits (94), Expect = 7e-15
Identities = 108/150 (72%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || ||| || |||||||||| || | | ||||||| ||
Sbjct 56781 GGGTCTTTCTGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTCTATTTCACCGAA 56840
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| |||||| || |||| |||| |||||||||||
Sbjct 56841 C-CTCTCTCCGAGACAGTGCCTAGATCATTACACCTTTTGTGCGGGTCAGAACTTACCCG 56899
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||| | |||
Sbjct 56900 ACAAGGAATTTCGCTACCTTAGGATCATTA 56929
>seq5319
Length=4086
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || || || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2033 TACGCCTTTTATGGAGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTT 1974
Query 173 A 173
|
Sbjct 1973 A 1973
>seq1309
Length=56175
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || || || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 47240 TACGCCTTTTATGGAGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTT 47299
Query 173 A 173
|
Sbjct 47300 A 47300
>seq1800
Length=36583
Score = 80.6 bits (88), Expect = 3e-13
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 127 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 6436 AGGTCGGAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTTA 6482
>seq286
Length=334870
Score = 80.6 bits (88), Expect = 3e-13
Identities = 107/150 (71%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || ||| || |||||||||| || | | ||||||| ||
Sbjct 270637 GGGTCTTTCTGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTCTATTTCACCGAA 270696
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| |||||| || |||| |||| |||||||||||
Sbjct 270697 C-CTCTCTCCGAGACAGTGCCTAGATCATTACACCTTTTGTGCGGGTCAGAACTTACCCG 270755
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||| |||||||| | |||
Sbjct 270756 ACAAGGAATTTCGCTGCCTTAGGATCATTA 270785
>seq362
Length=270902
Score = 73.4 bits (80), Expect = 4e-11
Identities = 90/127 (71%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNN 106
||| || ||||||||| || | | ||||||||| | | || | |||||||
Sbjct 249820 GTACTCCACATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGC 249761
Query 107 NNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166
||||| ||| || |||||| ||||| | |||||||||||||||||||||||
Sbjct 249760 AATCGTTACACACTTCATGGAGGTCGCTACTTATGCAACAAGGAATTTCGCTACCTTAGG 249701
Query 167 ACCGTTA 173
|| ||||
Sbjct 249700 ACAGTTA 249694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547149030885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |