Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 217 4e-54
seq7 217 4e-54
seq119 199 1e-48
seq552 174 4e-41
seq474 143 7e-32
seq718 129 1e-27
seq111 116 9e-24
seq302 100 7e-19
>seq9615
Length=156766
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 106833 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 106777
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 106776 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 106721
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 106720 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 106663
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 106662 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 106606
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 106605 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 106547
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 106546 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 106487
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 106486 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 106432
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 134823 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 134879
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 134880 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 134935
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 134936 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 134993
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 134994 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 135050
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 135051 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 135109
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 135110 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 135169
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 135170 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 135224
>seq7
Length=3634883
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 3427283 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3427227
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 3427226 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 3427171
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 3427170 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 3427113
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 3427112 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 3427056
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 3427055 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 3426997
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 3426996 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 3426937
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 3426936 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 3426882
>seq119
Length=756297
Score = 199 bits (220), Expect = 1e-48
Identities = 304/415 (73%), Gaps = 20/415 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 614024 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 614080
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| | ||||||| ||| | || |||||| || | ||
Sbjct 614081 ACCCAAGCTT-CATCCTGGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 614136
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 614137 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 614194
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 614195 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 614251
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 614252 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 614310
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| | |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 614311 TTCTTTTCAACCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 614370
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|| | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 614371 TT----GCTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 614421
Score = 96.9 bits (106), Expect = 9e-18
Identities = 102/131 (78%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | | ||||||||||
Sbjct 479225 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TATTTAGGGTTCTTTT 479283
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA-TTTAGCCTTGGAG 371
| |||||||||||||||||| || | |||||||||| | || | || | || ||| |||
Sbjct 479284 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACGTCAGGCTTAGAG 479343
Query 372 GATGGTCCCCC 382
| |||||||||
Sbjct 479344 GGTGGTCCCCC 479354
>seq552
Length=171149
Score = 174 bits (192), Expect = 4e-41
Identities = 267/363 (74%), Gaps = 16/363 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| |||||||||| | |||||| ||||| |
Sbjct 62777 CCACAACTCAT-CCGCTGA-TTCTTCAACATTAGTCGGTTCAGACCTCCACTTAGTT-TC 62721
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || ||| ||| | ||||||| ||| | || |||||| || ||
Sbjct 62720 ACCCAAGCTT-CATCCTAGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGT-AGT 62665
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||| ||||||||||| |||| | ||| |||| |
Sbjct 62664 GACAATT-GCCCTATGAAGACTCG-TTTTCGCTACGGCTCCAGTGGGTTCCCTTAACCAA 62607
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| ||| |||| | ||| ||| || | |||| | | |
Sbjct 62606 -GCCACTGCCTATGAGTCGCCGACTCATTCTTCAACAGGCACACGGTCAG--AGCCCCGG 62550
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || ||| ||||| | ||||||||||||||| | ||||
Sbjct 62549 GCTCCTCCCACTGCTTGGGAGCTTACAATTTCATGTTCTATTTCACTCCCCGATG-GGGG 62491
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| | |||||||||||||||| ||| |||||||||| || |||||||||||
Sbjct 62490 TTCTTTTCAACCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAAGAGTATTTAGCC 62431
Query 366 TTG 368
|||
Sbjct 62430 TTG 62428
>seq474
Length=202097
Score = 143 bits (158), Expect = 7e-32
Identities = 282/401 (70%), Gaps = 26/401 (6%)
Strand=Plus/Plus
Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88
|| |||| | |||||||||||| ||||| ||||| | |||||| || || ||||
Sbjct 108965 TTCTTCATCATTAGTCGGTTCGGAGCTCCATTTAGTT-TCACCCAAGATT-CATCCTGGT 109022
Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148
||| ||||| ||| ||| | ||| || ||||| | || ||| | |||||| ||||
Sbjct 109023 CAT-GGATAAATCACCCAGGTTTAGG-TCTATAAGC-AGTGACAATT-GCCCTATAAAGA 109078
Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206
|||||||| ||||||| || | | ||| |||| | |||||| || ||||||
Sbjct 109079 CTCGCTTT-CGCTACGGCTTCGATGGTTTCCCTTAACCAA-GCCACTATCTATGAGTCGC 109136
Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCAC---TGCT 260
||| |||| | ||| ||| ||| |||| ||| ||||||||| | | ||
Sbjct 109137 CGACTCATTCTTCAATAGGCTCGCGGTCAGAGCCC-------TGGGCTCCCCCCATTACT 109189
Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320
|| | | || ||||||| | ||||||||||| || | |||||| |||| || |||
Sbjct 109190 TGGAAGTTTATGGTTTCATGTTCTATTTCACT-CCTTGATGGGGGTTTTTTTAACCCTTC 109248
Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380
|||||| |||||| ||| || ||||||| || |||||||| ||||| | | ||||||
Sbjct 109249 CCTCACAGTACTACTTCGCTGTCGGTCACCTAGGAGTATTTAACCTTGCAAGGTGGTCCT 109308
Query 381 CCCATATTCAGACAAAGTTTCT-CGTGCTCCGTCCTACTCG 420
| ||||| || | |||| ||||| || | |||||||
Sbjct 109309 TGCTGATTCACAC-GGGATTCTACGTGCCCCATGCTACTCG 109348
>seq718
Length=124837
Score = 129 bits (142), Expect = 1e-27
Identities = 170/233 (73%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247
||||||| || |||| | || |||| | ||| ||| ||||||| | | |||
Sbjct 61561 GCCACTGCCTATGAGTCACCAACTCATTCTTCAACAGGCACGCAGTTAGAGCCCTAAGCT 61502
Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307
|||||| |||||| || || ||||||| | |||||||||||||| | ||||||
Sbjct 61501 C-CTCCCATTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCTAATA-GGGGTT 61444
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||||| || |||||| | ||||||| || |||||| ||| ||| |||||||||||||
Sbjct 61443 CTTTTCACCCTTCCCTTATGGTACTATTTTGCTATCGATCACCCAGGAGTATTTAGCCTT 61384
Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| | | |||||| | ||||| |||| || | ||||||| | |||||||
Sbjct 61383 GTAAGGTGGTCCTTGCTGATTCACACAAGATTCCATGTGCTCCATGCTACTCG 61331
>seq111
Length=783786
Score = 116 bits (128), Expect = 9e-24
Identities = 98/119 (82%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || || ||||||| | ||||||||||||||| | ||||||||
Sbjct 187472 CTCCCACTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCCAA-CGGGGGTTCT 187414
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
|||| || |||||||||||||||| || |||| ||||| || ||||||||||||||
Sbjct 187413 TTTCACCCTTCCCTCACGGTACTACTTTGCTATGGGTCACCTAGGAGTATTTAGCCTTG 187355
>seq302
Length=322921
Score = 100 bits (110), Expect = 7e-19
Identities = 169/237 (71%), Gaps = 12/237 (5%)
Strand=Plus/Minus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194
|||||| ||||||| |||| ||||||| |||| | ||| |||| | |||||||
Sbjct 288405 GCCCTATGAAGACTCACTTT-CGCTACGGCTCCAGTGGGTTCCCTTAACCAA-GCCACTG 288348
Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCT 251
|| |||||| | |||| | ||| | | |||| |||| ||| | | | ||
Sbjct 288347 CCTATGAGTCGCCAGCTCATTCTTCAACAAGCACGCGGTCAGAGCCC--CGAGCTC--CT 288292
Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311
|||||| ||| || |||| ||||| | | ||||||||||||| | ||||||||||
Sbjct 288291 CCCACTACTTAGGAGCTTACGTTTTCATGTTTTATTTCACTCCCCGATG-GGGGTTCTTT 288233
Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
|| | |||||||| ||| || || |||||| ||| ||| ||||||||||||||
Sbjct 288232 TCAACCTTCCCTCATCGTATTACTTAGCTATCGATCACCCAGGAGTATTTAGCCTTG 288176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241480620160
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