Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9615 217 4e-54 seq7 217 4e-54 seq119 199 1e-48 seq552 174 4e-41 seq474 143 7e-32 seq718 129 1e-27 seq111 116 9e-24 seq302 100 7e-19 >seq9615 Length=156766 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 106833 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 106777 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 106776 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 106721 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 106720 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 106663 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 106662 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 106606 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 106605 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 106547 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 106546 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 106487 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 106486 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 106432 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 134823 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 134879 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 134880 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 134935 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 134936 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 134993 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 134994 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 135050 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 135051 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 135109 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 135110 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 135169 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 135170 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 135224 >seq7 Length=3634883 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 3427283 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3427227 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 3427226 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 3427171 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 3427170 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 3427113 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 3427112 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 3427056 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 3427055 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 3426997 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 3426996 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 3426937 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 3426936 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 3426882 >seq119 Length=756297 Score = 199 bits (220), Expect = 1e-48 Identities = 304/415 (73%), Gaps = 20/415 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 614024 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 614080 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| | ||||||| ||| | || |||||| || | || Sbjct 614081 ACCCAAGCTT-CATCCTGGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 614136 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 614137 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 614194 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 614195 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 614251 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 614252 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 614310 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| | |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 614311 TTCTTTTCAACCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 614370 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 614371 TT----GCTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 614421 Score = 96.9 bits (106), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | | |||||||||| Sbjct 479225 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TATTTAGGGTTCTTTT 479283 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA-TTTAGCCTTGGAG 371 | |||||||||||||||||| || | |||||||||| | || | || | || ||| ||| Sbjct 479284 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACGTCAGGCTTAGAG 479343 Query 372 GATGGTCCCCC 382 | ||||||||| Sbjct 479344 GGTGGTCCCCC 479354 >seq552 Length=171149 Score = 174 bits (192), Expect = 4e-41 Identities = 267/363 (74%), Gaps = 16/363 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| |||||||||| | |||||| ||||| | Sbjct 62777 CCACAACTCAT-CCGCTGA-TTCTTCAACATTAGTCGGTTCAGACCTCCACTTAGTT-TC 62721 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || ||| ||| | ||||||| ||| | || |||||| || || Sbjct 62720 ACCCAAGCTT-CATCCTAGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGT-AGT 62665 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||| ||||||||||| |||| | ||| |||| | Sbjct 62664 GACAATT-GCCCTATGAAGACTCG-TTTTCGCTACGGCTCCAGTGGGTTCCCTTAACCAA 62607 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| ||| |||| | ||| ||| || | |||| | | | Sbjct 62606 -GCCACTGCCTATGAGTCGCCGACTCATTCTTCAACAGGCACACGGTCAG--AGCCCCGG 62550 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || ||| ||||| | ||||||||||||||| | |||| Sbjct 62549 GCTCCTCCCACTGCTTGGGAGCTTACAATTTCATGTTCTATTTCACTCCCCGATG-GGGG 62491 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| | |||||||||||||||| ||| |||||||||| || ||||||||||| Sbjct 62490 TTCTTTTCAACCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAAGAGTATTTAGCC 62431 Query 366 TTG 368 ||| Sbjct 62430 TTG 62428 >seq474 Length=202097 Score = 143 bits (158), Expect = 7e-32 Identities = 282/401 (70%), Gaps = 26/401 (6%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||| | |||||||||||| ||||| ||||| | |||||| || || |||| Sbjct 108965 TTCTTCATCATTAGTCGGTTCGGAGCTCCATTTAGTT-TCACCCAAGATT-CATCCTGGT 109022 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||| ||| ||| | ||| || ||||| | || ||| | |||||| |||| Sbjct 109023 CAT-GGATAAATCACCCAGGTTTAGG-TCTATAAGC-AGTGACAATT-GCCCTATAAAGA 109078 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 |||||||| ||||||| || | | ||| |||| | |||||| || |||||| Sbjct 109079 CTCGCTTT-CGCTACGGCTTCGATGGTTTCCCTTAACCAA-GCCACTATCTATGAGTCGC 109136 Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCAC---TGCT 260 ||| |||| | ||| ||| ||| |||| ||| ||||||||| | | || Sbjct 109137 CGACTCATTCTTCAATAGGCTCGCGGTCAGAGCCC-------TGGGCTCCCCCCATTACT 109189 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 || | | || ||||||| | ||||||||||| || | |||||| |||| || ||| Sbjct 109190 TGGAAGTTTATGGTTTCATGTTCTATTTCACT-CCTTGATGGGGGTTTTTTTAACCCTTC 109248 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 |||||| |||||| ||| || ||||||| || |||||||| ||||| | | |||||| Sbjct 109249 CCTCACAGTACTACTTCGCTGTCGGTCACCTAGGAGTATTTAACCTTGCAAGGTGGTCCT 109308 Query 381 CCCATATTCAGACAAAGTTTCT-CGTGCTCCGTCCTACTCG 420 | ||||| || | |||| ||||| || | ||||||| Sbjct 109309 TGCTGATTCACAC-GGGATTCTACGTGCCCCATGCTACTCG 109348 >seq718 Length=124837 Score = 129 bits (142), Expect = 1e-27 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||| | || |||| | ||| ||| ||||||| | | ||| Sbjct 61561 GCCACTGCCTATGAGTCACCAACTCATTCTTCAACAGGCACGCAGTTAGAGCCCTAAGCT 61502 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 |||||| |||||| || || ||||||| | |||||||||||||| | |||||| Sbjct 61501 C-CTCCCATTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCTAATA-GGGGTT 61444 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| || |||||| | ||||||| || |||||| ||| ||| ||||||||||||| Sbjct 61443 CTTTTCACCCTTCCCTTATGGTACTATTTTGCTATCGATCACCCAGGAGTATTTAGCCTT 61384 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| |||| || | ||||||| | ||||||| Sbjct 61383 GTAAGGTGGTCCTTGCTGATTCACACAAGATTCCATGTGCTCCATGCTACTCG 61331 >seq111 Length=783786 Score = 116 bits (128), Expect = 9e-24 Identities = 98/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || ||||||| | ||||||||||||||| | |||||||| Sbjct 187472 CTCCCACTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCCAA-CGGGGGTTCT 187414 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| || |||||||||||||||| || |||| ||||| || |||||||||||||| Sbjct 187413 TTTCACCCTTCCCTCACGGTACTACTTTGCTATGGGTCACCTAGGAGTATTTAGCCTTG 187355 >seq302 Length=322921 Score = 100 bits (110), Expect = 7e-19 Identities = 169/237 (71%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| ||||||| |||| ||||||| |||| | ||| |||| | ||||||| Sbjct 288405 GCCCTATGAAGACTCACTTT-CGCTACGGCTCCAGTGGGTTCCCTTAACCAA-GCCACTG 288348 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCT 251 || |||||| | |||| | ||| | | |||| |||| ||| | | | || Sbjct 288347 CCTATGAGTCGCCAGCTCATTCTTCAACAAGCACGCGGTCAGAGCCC--CGAGCTC--CT 288292 Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 |||||| ||| || |||| ||||| | | ||||||||||||| | |||||||||| Sbjct 288291 CCCACTACTTAGGAGCTTACGTTTTCATGTTTTATTTCACTCCCCGATG-GGGGTTCTTT 288233 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 || | |||||||| ||| || || |||||| ||| ||| |||||||||||||| Sbjct 288232 TCAACCTTCCCTCATCGTATTACTTAGCTATCGATCACCCAGGAGTATTTAGCCTTG 288176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241480620160