Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 224 2e-56
seq7 224 2e-56
seq119 167 5e-39
seq3021 136 9e-30
seq1408 136 9e-30
seq1547 109 1e-21
seq234 107 5e-21
seq562 104 5e-20
seq2 89.7 1e-15
>seq9615
Length=156766
Score = 224 bits (248), Expect = 2e-56
Identities = 301/408 (74%), Gaps = 17/408 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 107448 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107389
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 107388 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107329
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | || | ||| ||||| || || |
Sbjct 107328 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 107273
Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232
|| |||||||||||| | || ||| | ||||||||||||| ||| |||| ||
Sbjct 107272 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 107217
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 107216 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 107158
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||
Sbjct 107157 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 107098
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 107097 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107050
Score = 224 bits (248), Expect = 2e-56
Identities = 301/408 (74%), Gaps = 17/408 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 134208 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 134267
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 134268 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 134327
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | || | ||| ||||| || || |
Sbjct 134328 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 134383
Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232
|| |||||||||||| | || ||| | ||||||||||||| ||| |||| ||
Sbjct 134384 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 134439
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 134440 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 134498
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||
Sbjct 134499 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 134558
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 134559 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134606
>seq7
Length=3634883
Score = 224 bits (248), Expect = 2e-56
Identities = 301/408 (74%), Gaps = 17/408 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 3427898 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3427839
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 3427838 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3427779
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | || | ||| ||||| || || |
Sbjct 3427778 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 3427723
Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232
|| |||||||||||| | || ||| | ||||||||||||| ||| |||| ||
Sbjct 3427722 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 3427667
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 3427666 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 3427608
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||
Sbjct 3427607 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 3427548
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 3427547 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 3427500
>seq119
Length=756297
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 478578 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 478634
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 478635 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 478694
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 478695 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 478754
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 478755 GTTTCCCTCTCG 478766
>seq3021
Length=15607
Score = 136 bits (150), Expect = 9e-30
Identities = 139/180 (77%), Gaps = 6/180 (3%)
Strand=Plus/Minus
Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTAC 278
|| |||||||||| | |||||| ||| || ||| || ||| ||||||||||||
Sbjct 14240 ATCACTTAAGCCCTGATACATTTGCGGTGCCATGGAG---CTAGACTAGTGAGCTATTAT 14184
Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338
|| |||| |||||||||||||||||||||||||||||||||||| | | |||
Sbjct 14183 GCTTTCTTCAAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCATCACTTGATCACT 14124
Query 339 TCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|||||| ||||| ||| | ||||||| |||||| | |||||||| |||||||||||
Sbjct 14123 TCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGTGTACGATCTGGGTTGTTTCCCTCT 14064
>seq1408
Length=50609
Score = 136 bits (150), Expect = 9e-30
Identities = 145/190 (76%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||| | | || |||||||||| | |||||| ||| || ||| || ||| |||
Sbjct 29740 GCTTCAGTGAATCACTTAAGCCCTGATACATTTGCGGTGCCATGGAG---CTAGACTAGT 29796
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
||||||||| || |||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 29797 GAGCTATTATGCTTTCTTCAAAGGATGGTTGCTTCCAAGCCAACCTCCTGGTTGTCATCA 29856
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| |||||| | |||||||| |
Sbjct 29857 CTTGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGTGTACGATCTGGGTT 29916
Query 389 GTTTCCCTCT 398
||||||||||
Sbjct 29917 GTTTCCCTCT 29926
>seq1547
Length=44846
Score = 109 bits (120), Expect = 1e-21
Identities = 135/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||| |||| || || |||| ||| || | ||| || |||| | || || ||
Sbjct 12788 CCACAACTTCAGCAAATTGCTTA-GCCTCGTT-CATATTCTGCGCAAGAGAGCTCGATCA 12845
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||| ||||||| ||||||||||||| |||||||||| |||| |||||| ||| | | |
Sbjct 12846 ATGAACTATTACACACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCTTGGCTCTTTG 12905
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| |||| ||| || ||| |||||||||||| ||||| |||
Sbjct 12906 TGCACCCCTACCTCCTTTATCACTAAGTGGTCATTTAAGGGCCTTAGCTGGTGATCAGGG 12965
Query 387 CT 388
||
Sbjct 12966 CT 12967
>seq234
Length=416524
Score = 107 bits (118), Expect = 5e-21
Identities = 107/136 (79%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||||| ||||||||||||||||||| | | |||||| | || |||||||| ||||||
Sbjct 38172 AGTGAGTTATTACGCACTCTTTCAAGAGTTGTTGCTTCTAGGCAAACCTCCTAGTTGTC- 38230
Query 326 ACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384
|| || || || || ||| ||||||| || |||||||| ||| ||| |||||||
Sbjct 38231 ACTATACCCCTACCTCTTTTATCACTGAGCGGTCATTTAGGGGCTTTAACTGGTGATCTG 38290
Query 385 GGCTGTTTCCCTCTCG 400
| |||||||||||||
Sbjct 38291 GATTGTTTCCCTCTCG 38306
Score = 91.5 bits (100), Expect = 3e-16
Identities = 104/137 (76%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324
||||||| ||||| ||||||||||||| | | |||||| | || |||||||| ||||||
Sbjct 27536 CAGTGAGTTATTATGCACTCTTTCAAGAGTTGTTGCTTCTAGGCAAACCTCCTAGTTGTC 27595
Query 325 TACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383
|| || || || || ||| ||||||| || ||| |||| ||| || |||||
Sbjct 27596 -ACTATACCCCTACCTCATTTATCACTGAGCAGTCATTTAAGGGCTTTAATTGGTGATCC 27654
Query 384 GGGCTGTTTCCCTCTCG 400
||||||||| ||| |||
Sbjct 27655 GGGCTGTTTTCCTTTCG 27671
>seq562
Length=167234
Score = 104 bits (114), Expect = 5e-20
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || || ||| ||||||| |||||| |||||| ||||||||| |||| |||||| ||
Sbjct 147172 CTCGATCAATGAACTATTACACACTCTCTCAAGGGTGGCTGCTTTTAAGCAAACCTCTTG 147231
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
| | ||| ||| | | || |||||| |||| ||| || ||| |||||||||||| |
Sbjct 147232 GCTCTCTCTGCACCCCTACCTCCTTTATCACTAAGTGGTCATTTAAGGGCCTTAGCTGGT 147291
Query 379 GATCTGGGCT 388
|||| |||||
Sbjct 147292 GATCAGGGCT 147301
>seq2
Length=8082884
Score = 89.7 bits (98), Expect = 1e-15
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
||||| || | |||||||||||||||||| |||| |||||||||| | | ||| | |||
Sbjct 5584081 CTTGATCAATAAGCTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGACAAACTTTCTG 5584140
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
| | ||| || | | || |||||| || |||| | ||||| |||||| || |
Sbjct 5584141 GCTATCTCTACACCCCTACCTCCTTTATCATTGAGCGGTTATTTAGGTGCCTTAACTAGT 5584200
Query 379 GATCTGGGCTGTTTCCCTCTCG 400
||||| || || |||| |||||
Sbjct 5584201 GATCTAGGTTGCTTCCTTCTCG 5584222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177486773760
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