Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq9615 224 2e-56 seq7 224 2e-56 seq119 167 5e-39 seq3021 136 9e-30 seq1408 136 9e-30 seq1547 109 1e-21 seq234 107 5e-21 seq562 104 5e-20 seq2 89.7 1e-15 >seq9615 Length=156766 Score = 224 bits (248), Expect = 2e-56 Identities = 301/408 (74%), Gaps = 17/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 107448 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107389 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 107388 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107329 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | Sbjct 107328 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 107273 Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 || |||||||||||| | || ||| | ||||||||||||| ||| |||| || Sbjct 107272 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 107217 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 107216 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 107158 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||| Sbjct 107157 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 107098 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 107097 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107050 Score = 224 bits (248), Expect = 2e-56 Identities = 301/408 (74%), Gaps = 17/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 134208 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 134267 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 134268 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 134327 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | Sbjct 134328 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 134383 Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 || |||||||||||| | || ||| | ||||||||||||| ||| |||| || Sbjct 134384 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 134439 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 134440 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 134498 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||| Sbjct 134499 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 134558 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 134559 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134606 >seq7 Length=3634883 Score = 224 bits (248), Expect = 2e-56 Identities = 301/408 (74%), Gaps = 17/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 3427898 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3427839 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 3427838 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3427779 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | Sbjct 3427778 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCGCGCGGGTGCTTC-CCTCTAAGCG 3427723 Query 178 GA-CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 || |||||||||||| | || ||| | ||||||||||||| ||| |||| || Sbjct 3427722 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 3427667 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 3427666 CCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGG 3427608 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||| Sbjct 3427607 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGA 3427548 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 3427547 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 3427500 >seq119 Length=756297 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 478578 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 478634 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 478635 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 478694 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 478695 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 478754 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 478755 GTTTCCCTCTCG 478766 >seq3021 Length=15607 Score = 136 bits (150), Expect = 9e-30 Identities = 139/180 (77%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTAC 278 || |||||||||| | |||||| ||| || ||| || ||| |||||||||||| Sbjct 14240 ATCACTTAAGCCCTGATACATTTGCGGTGCCATGGAG---CTAGACTAGTGAGCTATTAT 14184 Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338 || |||| |||||||||||||||||||||||||||||||||||| | | ||| Sbjct 14183 GCTTTCTTCAAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCATCACTTGATCACT 14124 Query 339 TCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||||| ||||| ||| | ||||||| |||||| | |||||||| ||||||||||| Sbjct 14123 TCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGTGTACGATCTGGGTTGTTTCCCTCT 14064 >seq1408 Length=50609 Score = 136 bits (150), Expect = 9e-30 Identities = 145/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||| | | || |||||||||| | |||||| ||| || ||| || ||| ||| Sbjct 29740 GCTTCAGTGAATCACTTAAGCCCTGATACATTTGCGGTGCCATGGAG---CTAGACTAGT 29796 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| |||||||| ||||||||||||||||||||||||||| | Sbjct 29797 GAGCTATTATGCTTTCTTCAAAGGATGGTTGCTTCCAAGCCAACCTCCTGGTTGTCATCA 29856 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| |||||| | |||||||| | Sbjct 29857 CTTGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGTGTACGATCTGGGTT 29916 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 29917 GTTTCCCTCT 29926 >seq1547 Length=44846 Score = 109 bits (120), Expect = 1e-21 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| |||| || || |||| ||| || | ||| || |||| | || || || Sbjct 12788 CCACAACTTCAGCAAATTGCTTA-GCCTCGTT-CATATTCTGCGCAAGAGAGCTCGATCA 12845 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||| ||||||| ||||||||||||| |||||||||| |||| |||||| ||| | | | Sbjct 12846 ATGAACTATTACACACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCTTGGCTCTTTG 12905 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| |||| ||| || ||| |||||||||||| ||||| ||| Sbjct 12906 TGCACCCCTACCTCCTTTATCACTAAGTGGTCATTTAAGGGCCTTAGCTGGTGATCAGGG 12965 Query 387 CT 388 || Sbjct 12966 CT 12967 >seq234 Length=416524 Score = 107 bits (118), Expect = 5e-21 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||| ||||||||||||||||||| | | |||||| | || |||||||| |||||| Sbjct 38172 AGTGAGTTATTACGCACTCTTTCAAGAGTTGTTGCTTCTAGGCAAACCTCCTAGTTGTC- 38230 Query 326 ACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 || || || || || ||| ||||||| || |||||||| ||| ||| ||||||| Sbjct 38231 ACTATACCCCTACCTCTTTTATCACTGAGCGGTCATTTAGGGGCTTTAACTGGTGATCTG 38290 Query 385 GGCTGTTTCCCTCTCG 400 | ||||||||||||| Sbjct 38291 GATTGTTTCCCTCTCG 38306 Score = 91.5 bits (100), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||| ||||| ||||||||||||| | | |||||| | || |||||||| |||||| Sbjct 27536 CAGTGAGTTATTATGCACTCTTTCAAGAGTTGTTGCTTCTAGGCAAACCTCCTAGTTGTC 27595 Query 325 TACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 || || || || || ||| ||||||| || ||| |||| ||| || ||||| Sbjct 27596 -ACTATACCCCTACCTCATTTATCACTGAGCAGTCATTTAAGGGCTTTAATTGGTGATCC 27654 Query 384 GGGCTGTTTCCCTCTCG 400 ||||||||| ||| ||| Sbjct 27655 GGGCTGTTTTCCTTTCG 27671 >seq562 Length=167234 Score = 104 bits (114), Expect = 5e-20 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || || ||| ||||||| |||||| |||||| ||||||||| |||| |||||| || Sbjct 147172 CTCGATCAATGAACTATTACACACTCTCTCAAGGGTGGCTGCTTTTAAGCAAACCTCTTG 147231 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | | ||| ||| | | || |||||| |||| ||| || ||| |||||||||||| | Sbjct 147232 GCTCTCTCTGCACCCCTACCTCCTTTATCACTAAGTGGTCATTTAAGGGCCTTAGCTGGT 147291 Query 379 GATCTGGGCT 388 |||| ||||| Sbjct 147292 GATCAGGGCT 147301 >seq2 Length=8082884 Score = 89.7 bits (98), Expect = 1e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||| || | |||||||||||||||||| |||| |||||||||| | | ||| | ||| Sbjct 5584081 CTTGATCAATAAGCTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGACAAACTTTCTG 5584140 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | | ||| || | | || |||||| || |||| | ||||| |||||| || | Sbjct 5584141 GCTATCTCTACACCCCTACCTCCTTTATCATTGAGCGGTTATTTAGGTGCCTTAACTAGT 5584200 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 ||||| || || |||| ||||| Sbjct 5584201 GATCTAGGTTGCTTCCTTCTCG 5584222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177486773760