Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq351 123 2e-26
seq119 123 2e-26
seq9615 122 7e-26
seq414 122 7e-26
seq223 122 7e-26
seq7 122 7e-26
seq24 96.9 3e-18
>seq351
Length=278731
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 91737 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 91795
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 91796 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 91855
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 91856 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 91895
>seq119
Length=756297
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 732910 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 732968
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 732969 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 733028
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 733029 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 733068
>seq9615
Length=156766
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 103420 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 103361
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 103360 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 103301
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 103300 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 103261
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 138236 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 138295
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 138296 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138355
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 138356 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138395
>seq414
Length=232653
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 211995 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 211936
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 211935 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 211876
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 211875 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 211836
>seq223
Length=428319
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 78627 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 78568
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 78567 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 78508
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 78507 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 78468
>seq7
Length=3634883
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 3423870 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 3423811
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 3423810 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 3423751
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 3423750 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 3423711
>seq24
Length=2044711
Score = 96.9 bits (106), Expect = 3e-18
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| ||| ||||||| ||||||||| | || |||| ||| | |||||||| ||
Sbjct 285594 TTTTTGGAGTTAGCTCAGCCTCGCGGGATCGCTACCCTTTGTCTCAGCCATTGTAGCACA 285653
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| |||| |||||||| ||||| ||||||||||||||| |||||||||| || |
Sbjct 285654 TGTGTTGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCTGGCT 285713
Query 156 TGTCAC 161
| ||||
Sbjct 285714 TATCAC 285719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415961251550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |