Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq9615 268 1e-69 seq7 268 1e-69 seq119 205 1e-50 seq223 187 4e-45 seq64 176 7e-42 seq36 158 2e-36 seq7051 152 8e-35 seq966 127 3e-27 seq343 105 1e-20 seq124 100 4e-19 seq37 75.2 2e-11 >seq9615 Length=156766 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 108841 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 108782 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 108781 TTTACCGTGGGCACAATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 108722 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 108721 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 108662 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 108661 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 108602 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 108601 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 108569 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 132815 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 132874 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 132875 TTTACCGTGGGCACAATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 132934 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 132935 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 132994 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 132995 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 133054 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 133055 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 133087 >seq7 Length=3634883 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 3429291 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 3429232 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 3429231 TTTACCGTGGGCACAATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 3429172 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 3429171 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 3429112 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 3429111 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 3429052 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 3429051 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 3429019 >seq119 Length=756297 Score = 205 bits (226), Expect = 1e-50 Identities = 196/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||||||| || ||| || ||| ||||| ||| | Sbjct 476646 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTAGCATAACAACCGGTAC 476705 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || |||||||||| | ||| Sbjct 476706 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCTCAGTTCTCCCT 476765 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 476766 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 476825 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 476826 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 476885 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 476886 AGTCGACATCG 476896 >seq223 Length=428319 Score = 187 bits (206), Expect = 4e-45 Identities = 141/166 (85%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 110 GTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACC 169 |||||||| ||||| ||| || ||||||||| || |||||||| |||||| ||||| Sbjct 84381 GTCCTCTCATACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACC 84322 Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| |||||||||||||||||||| ||| || ||||||| ||||||||| ||| Sbjct 84321 GAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATTGGCGAACAGTCCA 84262 Query 230 ACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| || |||| |||||||||| | || |||||||||||| Sbjct 84261 ACCCTTGGAACATACTACAGCCCCAGGTGGTGAAGAGCCGACATCG 84216 >seq64 Length=1126094 Score = 176 bits (194), Expect = 7e-42 Identities = 195/259 (75%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTG-GCA 75 ||||||| | |||| | |||||| | | |||| ||| ||||||| | | | ||| Sbjct 704560 CTTAGATACTTTCAACAATTATCCGCTTCGCACTTGGCTACCCAGCTTTTACCGCGAGCA 704501 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| || || |||| ||| || ||||||| |||||||||| | || |||| Sbjct 704500 CAATAACTGGTACATCAAAGGTGCATCCTTCTCGGTCCTTTCGTACTAAGAAAAGGTCCT 704441 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || |||||||| |||||| ||| | ||||||||| |||| |||||||||| Sbjct 704440 CTCAATGCTCTAACGCCCACACCGGATATGGATCTAACTGTCTCACGACATTCTGAACCC 704381 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| || || |||||||||| ||||| |||||| ||||| || || || ||| || Sbjct 704380 AGCTCATGTACCACTTTAATGGGTGAACAACCCAACTCTTGGAACACGCTGCATCCCTAG 704321 Query 256 GATGAGACGAGCCGACATC 274 | | || ||||||||||| Sbjct 704320 GTGGCGAAGAGCCGACATC 704302 >seq36 Length=1800412 Score = 158 bits (174), Expect = 2e-36 Identities = 191/259 (74%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTG-GCA 75 ||||||||| |||| |||||| ||| ||||| || |||| | | | || ||| Sbjct 1517615 CTTAGATGCTTTCATTAGTTATCCGCTCCGCACTTAACTACCCAACATTTATCGTGAGCA 1517674 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| ||| |||||| ||||| |||| | ||||| |||||| | | || |||| Sbjct 1517675 TAATAACTGGTACACTAGAGGTATGTCCTTCCCAGCCCTCTTGTACTAGGAAAAGGTCCT 1517734 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 | || || || ||||| || ||| |||| ||||| |||| ||| || ||||||| Sbjct 1517735 TTTAATGCTCTAACACCCACACCGAATATGGACTGAACTATCTCACGATATTTTGAACCC 1517794 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| |||| || ||| |||| |||||||||||| || |||| |||||| || Sbjct 1517795 AGCTCACGTATAGCTTTGATAGGCAAACAACCCAACCCTTGGAACATACTACAGCCCTAG 1517854 Query 256 GATGAGACGAGCCGACATC 274 | | || ||||||||||| Sbjct 1517855 GTGGCGAGGAGCCGACATC 1517873 >seq7051 Length=1661 Score = 152 bits (168), Expect = 8e-35 Identities = 192/260 (74%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTG-GCA 75 ||||||||| ||||| |||||| ||| |||||||| |||| | | | || ||| Sbjct 1639 CTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTAGCTACCCAACATTTATCGTGAGCA 1580 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| | |||||||| || |||| | ||||| |||||| | | || |||| Sbjct 1579 CAATAACTGGTACGCCAGAGGTGCATCTTTCCCAGCCCTCTTGTACTAGGAAAAGGTCCT 1520 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 | || || || ||||| || ||| |||| ||||| |||| ||| || ||||||| Sbjct 1519 TTTAATGCTCTAACACCCACACCGAATATGGACTGAACTATCTCACGATATTTTGAACCC 1460 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| |||| || ||| |||| |||||||||||| || |||| |||||||| Sbjct 1459 AGCTCACGTATAGCTTTGATAGGCAAACAACCCAACCCTTGGAACATACTACAGCCCCAA 1400 Query 256 GATGA-GACGAGCCGACATC 274 | ||| || ||||||||||| Sbjct 1399 G-TGACGAGGAGCCGACATC 1381 >seq966 Length=86411 Score = 127 bits (140), Expect = 3e-27 Identities = 186/259 (72%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| ||||| |||||| ||| | || ||| |||||| | | | | |||| Sbjct 83585 CTTAGATGCTTTCAGTAGTTATCCACTCCGGATTTGGCTACCCAGCGTTTACCGTGGGCA 83526 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| ||| | |||| | || || || ||||||| ||||| | | || |||| Sbjct 83525 CAATAACTGGTACACTAAAGGTGCGCCCTTCTCGATCCTCTCTTACTAGGAAAAGGTCCT 83466 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 || || || || ||||| |||| |||| |||| |||| ||| ||||||||||| Sbjct 83465 CTTAATGCTCTAACACCCACACTAGATATGGACTAAACTATCTCACGATGTTCTGAACCC 83406 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| | || |||| |||| || |||| ||||||| ||| ||| | ||| | ||| Sbjct 83405 AGCTCATGCACCATTTTATTGGGTGAGTAGCCTAACCCTT-GGAACTATTACAG-CTCAG 83348 Query 256 GATGAGACGAGCCGACATC 274 | |||| |||| ||||| Sbjct 83347 GTGGAGAAGAGCTAACATC 83329 >seq343 Length=285249 Score = 105 bits (116), Expect = 1e-20 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||||| |||| |||| ||| || ||| | | | | |||| Sbjct 238668 CTTAGATGCTTTCAGCAGTTATCCGTTCCGCACTTGGCTACCTAGCATTTACCGTGGGCA 238609 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| ||| |||| | ||||| ||||||||||||||||||| ||| ||||||| Sbjct 238608 TAATAACTGGTACACTAGAGATGTGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGCTCCT 238549 Query 136 CTCAAATTTCCTACGCCCACGACGGATA 163 |||| || ||| |||| || ||| Sbjct 238548 TTCAATGCTCTAACGTCCACACCGAATA 238521 >seq124 Length=715905 Score = 100 bits (110), Expect = 4e-19 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 ||||| || ||| || |||| | |||| | | ||||||||||| |||| | | || Sbjct 591915 CCTCTTAATGCTCCAACCACCACACCAGATATGAAGCGAACTGTCTCACGACATGCCAAA 591856 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||||||| ||| || |||||| ||||||||| |||| |||||| || | || |||| | Sbjct 591855 CCCAGCTCACGTACCGTTTTAATAGGCGAACAGTCCAATCCTTGGAACATGCTACAGCTC 591796 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||| || || ||||||| |||| Sbjct 591795 CAGTTTGTGAAGAGCCGATATCG 591773 >seq37 Length=1716566 Score = 75.2 bits (82), Expect = 2e-11 Identities = 117/165 (71%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| || || |||| ||| | | ||||||||||||| |||||| | Sbjct 1630299 GGCATAATAACTGGTACAGCAAAGGTGTGTTCTTTTCGGTCCTCTCGTA-TAAGGAAAAT 1630241 Query 132 -TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||||| || || || | | |||| ||| || ||||||| || |||| Sbjct 1630240 ATCCTCTAAATGCTCTAACACTTATATTAGATATAGACGAAATTGTCTCGTCACATTCTA 1630181 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTT 235 |||| ||||| | | |||||| ||||||||||||||||||| Sbjct 1630180 AACCTAGCTCACATATTGTTTTAATAGGCGAACAGCCCAACCCTT 1630136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780727272140