Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq9615 273 5e-71 seq414 273 5e-71 seq223 273 5e-71 seq7 273 5e-71 seq119 214 4e-53 seq1971 156 1e-35 seq274 149 2e-33 seq24 95.1 3e-17 seq218 77.0 8e-12 >seq9615 Length=156766 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 102587 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 102646 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 102647 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 102706 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 102707 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 102766 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| || ||| Sbjct 102767 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTGAA 102826 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 102827 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 102886 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 102887 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 102945 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 102946 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 102990 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 139069 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 139010 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 139009 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 138950 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 138949 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 138890 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| || ||| Sbjct 138889 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTGAA 138830 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 138829 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 138770 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 138769 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 138711 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 138710 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 138666 >seq414 Length=232653 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 211162 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 211221 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 211222 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 211281 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 211282 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 211341 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| || ||| Sbjct 211342 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTGAA 211401 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 211402 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 211461 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 211462 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 211520 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 211521 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 211565 >seq223 Length=428319 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||| ||||||||||||||| ||| || ||| Sbjct 77794 TGGGGAATAAGCATCGGCTAACTCTGTGCCAACAGCCGCGGTAATACAGAGGATGCAAGC 77853 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 77854 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 77913 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 77914 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 77973 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| || ||| |||||||||||||||||| || | | |||||||| || ||| Sbjct 77974 GAGGGAATTTCTGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTGAA 78033 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 78034 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 78093 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 78094 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 78152 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 78153 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 78197 >seq7 Length=3634883 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 3423037 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 3423096 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 3423097 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 3423156 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 3423157 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 3423216 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| || ||| Sbjct 3423217 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGTGAA 3423276 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 3423277 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 3423336 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 3423337 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 3423395 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 3423396 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 3423440 >seq119 Length=756297 Score = 214 bits (236), Expect = 4e-53 Identities = 255/343 (74%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 734081 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 734022 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || || | |||||| ||||||||||||||| |||||| ||| | || | | || Sbjct 734021 AGTCTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGG-GTTG 733968 Query 122 AAAGGCTATGGCTC----AACCCCGGGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGC 174 |||| | | | | | ||| ||| |||| | ||||| | || || ||||| Sbjct 733967 AAAGTCAAAGTCGCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGA 733911 Query 175 AGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234 || || ||||||||| | |||||| |||||||| || |||| | | |||||| | Sbjct 733910 GACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGC 733851 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 || |||||||| ||| |||| || ||| ||| || ||||||| |||||||| Sbjct 733850 CAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGC 733791 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 733790 GAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 733748 >seq1971 Length=31893 Score = 156 bits (172), Expect = 1e-35 Identities = 187/254 (74%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| |||||| |||||||||||||| ||| | ||||||||||||||| | Sbjct 17857 GGCTAACTCTGTGCCAATAGCCGCGGTAATACAGAGGATGTAAGCGTTATCCGGAATGAT 17798 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||||| ||| || ||||||| || ||||||| | || ||| ||| ||||||||| Sbjct 17797 TGGGCGTGAAGCGTCTATAGGTGGCTTTTTAAGTCCGCCGTCAAATCCTAAGGCTCAACC 17738 Query 140 CCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGT 199 | || || | |||| ||| |||||||| || ||||| | |||||| || Sbjct 17737 CTGGTTAGGCGGTGGAAATTGCCAAGCTAGAGTATAGTAGGGGTAGAGGGAATTTACGGT 17678 Query 200 GTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGAC 259 | || ||||||||||||||| || || | |||||||| || ||| || ||||| | | Sbjct 17677 GGAGAGGTGAAATGCGTAGAGATCAGAAAGAACACCAACGGTGAAAGCACTTTGCTAGGC 17618 Query 260 TGTAACTGACACTG 273 | |||||||||| Sbjct 17617 CGACACTGACACTG 17604 >seq274 Length=346057 Score = 149 bits (164), Expect = 2e-33 Identities = 240/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||| ||| |||| | |||||| || |||||| | ||||||||| || | Sbjct 103724 TATTTGGGGAATAAGCATCAACTAACTCTATGTCAGCAGTCACGGTAATACAGAGTATAC 103665 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 | |||||||| ||| | |||| |||||| | ||||| || || ||||||| | | Sbjct 103664 AAACGTTATCCAAAATGATTGGGTGTAAAGTATCTGTAGGAGGCTTTTTAAGTCTGCAAT 103605 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | ||||||| || || ||| | |||||| | ||| |||| | | | Sbjct 103604 CAAATCTCAAGGCTCAAACCTGGACAGGCTATGGAAACTACCAAGCTGGAGTATGGTATG 103545 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 ||||| |||||| || ||| |||||||||||| || | ||||| | |||||||| | | Sbjct 103544 GGCAAAGGGAATTTCTGGTGGAGCGGTGAAATGAATAAAGATTAGAAAGAACACCAATAG 103485 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||| || ||| ||| | | || |||||||||| | ||||| | |||| || Sbjct 103484 TGAAAGCATTTTGATGGGCCGAAATTGACACTGAGAGACCAAAGCTAAGAGAGCGAATGA 103425 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||||| || |||||||| ||| ||||| ||| ||||| || Sbjct 103424 GATTAGATATCCCAGTAGTCCAAGCCATAAACAATGGATACTGGG 103380 >seq24 Length=2044711 Score = 95.1 bits (104), Expect = 3e-17 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 41 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 ||||||||||| ||| || ||| ||||| |||| | ||||||||||| || ||||| Sbjct 286468 CGCGGTAATACAGAGGATGCAAGCATTATCTAGAATGATTGGGCGTAAAGAGTTTGTAGG 286409 Query 101 TGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCT-TTTGAAACT 159 ||| || ||||||| || ||| | |||||| || ||| |||| | | | ||||| Sbjct 286408 TGGCTTTTTAAGTCCACCGTCAAATCCCATGGCTTAA-CCCTGGACGGGTGGTGGAAACG 286350 Query 160 GCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 || |||||||| | | | ||||| |||||| || || |||| ||||||| Sbjct 286349 GCCAAGCTAGAGTACGGTATGGGCAGAGGGAATTTCTGATGGAGCGATGAAATG 286296 >seq218 Length=447883 Score = 77.0 bits (84), Expect = 8e-12 Identities = 93/127 (73%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 96 GTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGA 155 |||||||| || ||||||| | || ||| | | |||||||||| || || | || Sbjct 203293 GTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGA 203352 Query 156 AACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCG 215 |||||| ||| |||| | | ||||||| |||||| | ||| |||||||||||||| Sbjct 203353 AACTGCCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCG 203412 Query 216 TAGATAT 222 ||| || Sbjct 203413 AAGAGAT 203419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203084312320