Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq9615 123 5e-26 seq7 123 5e-26 seq552 93.3 8e-17 seq119 89.7 9e-16 >seq9615 Length=156766 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 106073 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 106132 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 106133 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 106185 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| ||| Sbjct 106186 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106242 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 106243 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106302 Query 249 CCT 251 ||| Sbjct 106303 CCT 106305 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 135583 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 135524 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 135523 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 135471 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| ||| Sbjct 135470 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135414 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 135413 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135354 Query 249 CCT 251 ||| Sbjct 135353 CCT 135351 >seq7 Length=3634883 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 3426523 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 3426582 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 3426583 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 3426635 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| ||| Sbjct 3426636 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 3426692 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 3426693 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 3426752 Query 249 CCT 251 ||| Sbjct 3426753 CCT 3426755 >seq552 Length=171149 Score = 93.3 bits (102), Expect = 8e-17 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 150 GGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCA 208 |||| |||| || ||| ||||||||||||||||| |||| | ||||||||||| || Sbjct 62151 GGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCA 62210 Query 209 ACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | | |||||||| ||||| ||||||||||||||| ||||| Sbjct 62211 AAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGCGCAGCCT 62253 >seq119 Length=756297 Score = 89.7 bits (98), Expect = 9e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||| | ||||||||||| ||| | ||||||| ||||| Sbjct 614631 GGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 614572 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 614571 CGGCGAGCGAAATGGGAGCAGCCT 614548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918311695840