Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 123 5e-26
seq7 123 5e-26
seq552 93.3 8e-17
seq119 89.7 9e-16
>seq9615
Length=156766
Score = 123 bits (136), Expect = 5e-26
Identities = 176/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 106073 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 106132
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 106133 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 106185
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| |||
Sbjct 106186 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106242
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 106243 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106302
Query 249 CCT 251
|||
Sbjct 106303 CCT 106305
Score = 123 bits (136), Expect = 5e-26
Identities = 176/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 135583 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 135524
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 135523 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 135471
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| |||
Sbjct 135470 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135414
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 135413 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135354
Query 249 CCT 251
|||
Sbjct 135353 CCT 135351
>seq7
Length=3634883
Score = 123 bits (136), Expect = 5e-26
Identities = 176/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 3426523 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 3426582
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 3426583 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 3426635
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| ||| |||| ||| || |||||| || ||| ||||||||||||||||| |||
Sbjct 3426636 C--TGC-TGCCGAATCCATGGGCATGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 3426692
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 3426693 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 3426752
Query 249 CCT 251
|||
Sbjct 3426753 CCT 3426755
>seq552
Length=171149
Score = 93.3 bits (102), Expect = 8e-17
Identities = 83/103 (81%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 150 GGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCA 208
|||| |||| || ||| ||||||||||||||||| |||| | ||||||||||| ||
Sbjct 62151 GGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCA 62210
Query 209 ACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
| | |||||||| ||||| ||||||||||||||| |||||
Sbjct 62211 AAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGCGCAGCCT 62253
>seq119
Length=756297
Score = 89.7 bits (98), Expect = 9e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
||||||||||||||||| |||| | ||||||||||| ||| | ||||||| |||||
Sbjct 614631 GGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 614572
Query 228 TGGCGAGCGAAATGGGATGAGCCT 251
|||||||||||||||| |||||
Sbjct 614571 CGGCGAGCGAAATGGGAGCAGCCT 614548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918311695840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |