Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq9615 123 5e-26
seq414 123 5e-26
seq7 123 5e-26
seq223 122 2e-25
seq218 122 2e-25
seq119 116 8e-24
seq1971 89.7 1e-15
>seq9615
Length=156766
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 102623 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 102575
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||||| ||||| ||| |||||
Sbjct 102574 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 102522
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| ||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 102521 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102462
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 102461 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102402
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 102401 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 102363
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 139033 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 139081
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||||| ||||| ||| |||||
Sbjct 139082 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 139134
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| ||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 139135 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139194
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 139195 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139254
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 139255 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 139293
>seq414
Length=232653
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 211198 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 211150
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||||| ||||| ||| |||||
Sbjct 211149 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 211097
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| ||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 211096 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 211037
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 211036 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 210977
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 210976 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 210938
>seq7
Length=3634883
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 3423073 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 3423025
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||||| ||||| ||| |||||
Sbjct 3423024 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 3422972
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| ||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 3422971 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 3422912
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 3422911 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 3422852
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 3422851 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 3422813
>seq223
Length=428319
Score = 122 bits (134), Expect = 2e-25
Identities = 147/199 (74%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||||| ||||| ||||||||| | | ||| ||| ||
Sbjct 77767 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAAGCTT 77709
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 77708 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 77649
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | || ||| || ||
Sbjct 77648 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATT 77589
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 77588 GCCTCACCAACTAGCTAAT 77570
>seq218
Length=447883
Score = 122 bits (134), Expect = 2e-25
Identities = 147/199 (74%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||||| ||||| ||| ||||| | | ||| ||| ||
Sbjct 292560 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 292618
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 292619 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 292678
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | | || ||| || ||
Sbjct 292679 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 292738
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 292739 GCCTCACCAACTAGCTAAT 292757
>seq119
Length=756297
Score = 116 bits (128), Expect = 8e-24
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 734130 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 734189
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 734190 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 734249
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 734250 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 734309
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 734310 GCAGGCTCATCAAACAGCG 734328
>seq1971
Length=31893
Score = 89.7 bits (98), Expect = 1e-15
Identities = 142/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTG-GTTCAGACT 139
||| |||||| || | |||||| |||||| ||| ||||| | | ||| ||| || ||
Sbjct 17899 AAAGGAAGTTCACGACCCGTAGG-CCTTCAACCTCCACGCGGCATTGCTTCGTTAAG-CT 17956
Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199
||| |||| | || ||||| || | ||||| ||||||||||||| ||||||| |
Sbjct 17957 TTCGCCCATCGTAGAAAATTCCCCATTATTGCCTTGCGTAGGAGTTTGGGTCGTGTCTTA 18016
Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259
|| | | ||||| || | ||||||| || | ||| ||| | | || || ||| |
Sbjct 18017 GTCCTAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGATCATTGCCTTAGTAAGCCAT 18076
Query 260 TACCCCGCCTACTACCTAAT 279
|||| | || |||| |||||
Sbjct 18077 TACCTCACCAACTATCTAAT 18096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068697234880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |