Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq435 210 2e-49 seq549 154 1e-32 >seq435 Length=220439 Score = 210 bits (232), Expect = 2e-49 Identities = 561/844 (66%), Gaps = 20/844 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| ||||| || || ||||||| || ||||||||| | || ||| Sbjct 105170 ATGTACAAGAAGGCTGAAGCCTCGTTTTGGACGGCTGAAGAGGTCGATCTCTCTTCAGAT 105111 Query 61156 ATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 | | ||||||| | | || | | ||| ||| |||||| || || | | Sbjct 105110 CTCCGTCACTGGGAAAACCTGACTCCTGACGAGAA--ACACTTCATTTCTCACGTCCTTG 105053 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGG 61273 | ||||| || || || || || |||||| |||||| | | |||||| | | | Sbjct 105052 CCTTCTTCGCTGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGGCGTTTCATGAAAG 104993 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 | || ||||| |||||||||||| ||||||||| |||||||| || || |||||| ||| Sbjct 104992 AAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCGATTGAGAATATCC 104933 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC 61393 ||||||||||||||||| || | | || || ||||||| ||| | || | | Sbjct 104932 ACTCGGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACTGAGAAGAACC 104873 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | |||| ||||||| |||||| | ||| ||| ||| ||||| ||||| || Sbjct 104872 GTCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAGTGGGCTTTAC 104813 Query 61454 ATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| || || ||| | | |||| || | || | |||||||| || Sbjct 104812 GGTGGAT----AG-ACGGAGGCGAGAGTTTTGCGGAGAGGTTAATCGCATTTGCTTGCGT 104758 Query 61512 CGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || || |||||||| | ||| |||| || || |||||| | || |||||||| | Sbjct 104757 GGAAGGGATATTTTTCTCGGGGAGTTTTTG-TGCGATATTTTGGCTAAAAAAACGTGGGC 104699 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || ||||||||| || |||||||| || || || || || | ||||||| Sbjct 104698 TAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTG 104639 Query 61631 ATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 |||| || || || || | || || || ||| | | |||||||| ||| Sbjct 104638 ATTTCGCGTGCCTT-CTTTACA---GCCTGTTGAGGAAGAAACTGAGTGAGGAGCGCGTG 104583 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | ||| || ||||| || ||| || ||| ||| || ||| | | || Sbjct 104582 AAGGGGATAGTGAAGGAGGCTGTGGATATAGAGAGGGAGTTTGTGGTGGACTCGCTACCA 104523 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | | | || |||||| | | | | ||| ||||||||||| ||||| || || Sbjct 104522 TGCGCTTTGGTGGGGATGAATGGGGAATTGATGAGTCAGTATATTGAGTTTGTAGCTGAT 104463 Query 61810 CGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 | ||||| ||| |||||| | | | | || ||| | || |||||||||| Sbjct 104462 AGGCTGTTGGGTGCGCTTGGGTGCG-GGAAGGTGTACAATGTGGCTAATCCATTTGATTG 104404 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||| || || | || ||||| ||||| ||||||||| | || || || || Sbjct 104403 GATGGAGTTGATATCCTTGCAAGGGAAGACAAATTTCTTCGAGAAAAGAGTCGGGGAGTA 104344 Query 61929 TCAA 61932 |||| Sbjct 104343 TCAA 104340 >seq549 Length=172529 Score = 154 bits (170), Expect = 1e-32 Identities = 543/841 (65%), Gaps = 14/841 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || ||||| ||||| | |||||||||||| | || || Sbjct 30300 ATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCGTCGGAT 30359 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 || ||||||| | | || || | || ||||| ||||| | || Sbjct 30360 ATCCGCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCC 30419 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || || || || ||| || ||| | | |||||| | | ||| Sbjct 30420 TTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTTCATGAAAGAG 30479 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| |||||||||||| ||| ||||| |||||||| || || |||||| ||||| Sbjct 30480 GTCCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATATCCAC 30539 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 || |||||||||||| |||| | || || || |||| ||| | ||| | || Sbjct 30540 TCCGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGC 30599 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||| |||| ||||| ||| | ||| ||| ||| || |||||||| Sbjct 30600 CTGTTTCATGCTATCGAAACGGTGCCGTGCGTGGCTAAGAAGGCACGGTGGGCCTTGCGG 30659 Query 61456 TGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | | || | | || | ||| | | | || ||||| || | Sbjct 30660 TGGATTGACGGGA-----GCGAGAGTTTCGCGGAAAGGCTAGTTGCTTTTGCTTGCGTGG 30714 Query 61514 AGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 | || |||||||| | ||| |||| || || |||||||| || || ||||| | Sbjct 30715 AAGGGATATTTTTCTCGGGGAGTTTTTG-TGCGATATTTTGGTTAAAAAAGCGTGGGTTG 30773 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || ||||| || |||||||| || || || || || | ||||||||| Sbjct 30774 ATGCCGGGGCTAACCTTTTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTGAT 30833 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 || || |||| | || ||| ||| ||| | | ||||||| ||| | Sbjct 30834 TTCGCGTGCCTGCTCTACA---GCTTGCTGAGGAAGAAGCTGAGTGAGGAGCAAGTGAGA 30890 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 | ||| || || || || ||| || ||| ||| || ||||| |||| | Sbjct 30891 GGGATAGTGAAGGATGCTGTGGATATTGAGAGGGAGTTTGTGGTGGACGCGCTGCCATGC 30950 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | | | || ||||| | | ||||| ||||||||||| || || || || | Sbjct 30951 GCGTTGGTAGGGATGAACGGGGAGTTAATGAGTCAGTATATTGAGTTCGTAGCTGATAGG 31010 Query 61813 CTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 |||| ||| |||||| | | | | || ||| | || ||||| |||| || Sbjct 31011 ATGTTGGGTGCGCTTGGGTGCG-GGAAGGTGTACAATGTGGCCAATCCATTCGATTGGAT 31069 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| |||| || || | || ||||| ||||| ||||||||| | ||||| || ||||| Sbjct 31070 GGAGTTGATATCTTTGCAAGGGAAGACTAATTTCTTCGAGAAAAGAGTAGGAGAGTATCA 31129 Query 61932 A 61932 | Sbjct 31130 A 31130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397521411863600