Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq2514 82.4 1e-13
>seq2514
Length=157033
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 106802 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 106861
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 106862 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 106920
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 106921 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 106976
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 106977 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 107036
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 107037 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 107096
Query 312 AATCAAAC 319
| || |||
Sbjct 107097 ACTCGAAC 107104
Score = 82.4 bits (90), Expect = 1e-13
Identities = 206/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 135361 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 135302
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 135301 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 135243
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 135242 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 135187
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 135186 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 135127
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 135126 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 135067
Query 312 AATCAAAC 319
| || |||
Sbjct 135066 ACTCGAAC 135059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972775543808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |