Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2514 226 6e-57 seq2 80.6 6e-13 >seq2514 Length=157033 Score = 226 bits (250), Expect = 6e-57 Identities = 257/337 (76%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||| ||||||||||| Sbjct 102799 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCA 102742 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 102741 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 102682 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 102681 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 102622 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 102621 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 102575 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 102574 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 102518 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 102517 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 102481 Score = 226 bits (250), Expect = 6e-57 Identities = 257/337 (76%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||| ||||||||||| Sbjct 139364 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCA 139421 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 139422 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 139481 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 139482 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 139541 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 139542 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 139588 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 139589 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 139645 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 139646 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 139682 >seq2 Length=23562801 Score = 80.6 bits (88), Expect = 6e-13 Identities = 141/201 (70%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| || || |||||| | | |||| | |||| | | ||| |||||| | | Sbjct 5091635 TTCACAACTCGTAGGCCTTCTACCTC-CACGTGAAATTGCTTTG-TCAAGCTTTCACTCG 5091578 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| | || | |||| | | |||||| | |||||| ||| | |||| |||| | | | Sbjct 5091577 TTG-CAAAAACTCCCTATTATTGCCTCTTGCAGGAGTTTGGGTCATGTCGCAGTCCTAAT 5091519 Query 122 G----TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 ||||||||||||||| |||| || || |||| ||||||| || | ||| || Sbjct 5091518 TAATATGACTGATCATCCTCCCAGATCAACTAATGATCATCGCCTTAGTAAATTATTGCC 5091459 Query 178 TCACCAACTAGCTAATCCGAC 198 |||| ||||| |||||| ||| Sbjct 5091458 TCACTAACTAACTAATCAGAC 5091438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071973049920