Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq2514 226 6e-57
seq2 80.6 6e-13
>seq2514
Length=157033
Score = 226 bits (250), Expect = 6e-57
Identities = 257/337 (76%), Gaps = 21/337 (6%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || ||| |||||||||||
Sbjct 102799 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCA 102742
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 102741 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 102682
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 102681 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 102622
Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||| ||| | || | | || || ||| || ||| |||
Sbjct 102621 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 102575
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299
| | | | | | || | ||||||||| |||||||| ||| | ||| || |||
Sbjct 102574 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 102518
Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
||||| ||| || || ||||||||||||||||| ||
Sbjct 102517 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 102481
Score = 226 bits (250), Expect = 6e-57
Identities = 257/337 (76%), Gaps = 21/337 (6%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || ||| |||||||||||
Sbjct 139364 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCA 139421
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 139422 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 139481
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 139482 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 139541
Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||| ||| | || | | || || ||| || ||| |||
Sbjct 139542 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 139588
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299
| | | | | | || | ||||||||| |||||||| ||| | ||| || |||
Sbjct 139589 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 139645
Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
||||| ||| || || ||||||||||||||||| ||
Sbjct 139646 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 139682
>seq2
Length=23562801
Score = 80.6 bits (88), Expect = 6e-13
Identities = 141/201 (70%), Gaps = 7/201 (3%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| |||| || || |||||| | | |||| | |||| | | ||| |||||| | |
Sbjct 5091635 TTCACAACTCGTAGGCCTTCTACCTC-CACGTGAAATTGCTTTG-TCAAGCTTTCACTCG 5091578
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| | || | |||| | | |||||| | |||||| ||| | |||| |||| | | |
Sbjct 5091577 TTG-CAAAAACTCCCTATTATTGCCTCTTGCAGGAGTTTGGGTCATGTCGCAGTCCTAAT 5091519
Query 122 G----TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177
||||||||||||||| |||| || || |||| ||||||| || | ||| ||
Sbjct 5091518 TAATATGACTGATCATCCTCCCAGATCAACTAATGATCATCGCCTTAGTAAATTATTGCC 5091459
Query 178 TCACCAACTAGCTAATCCGAC 198
|||| ||||| |||||| |||
Sbjct 5091458 TCACTAACTAACTAATCAGAC 5091438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071973049920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |